Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1525 223 4e-53 seq36034 145 8e-30 seq25410 134 1e-26 seq549 102 8e-17 >seq1525 Length=329219 Score = 223 bits (246), Expect = 4e-53 Identities = 421/613 (69%), Gaps = 6/613 (1%) Strand=Plus/Minus Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978 |||| | ||| || ||| | ||| || ||||| |||||||| || || || || || Sbjct 304920 ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAG 304861 Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038 ||||| |||||||||||||| |||||||| || |||||||| | ||||||||| |||| Sbjct 304860 TGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCT 304801 Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098 |||||||| | ||| ||||||| || || || ||||||||||| || || || || | Sbjct 304800 CGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCG 304741 Query 17099 GCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACC 17158 ||||| || || | ||||| | ||||| || ||| ||| ||||| | || Sbjct 304740 GCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCAGCGCAAGGCC 304681 Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTT 17216 || || || || | ||||| ||| ||| || || ||||| || | | | ||| ||| Sbjct 304680 CAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAGATTCCCTT 304621 Query 17217 TTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGT 17276 | | || | || | | || || || |||| || || |||||||| || ||||||| Sbjct 304620 TCT-TTGGA-ATCTTTAACGTAAGTGTCATTGAGGAGACTATACATTTCCGAATGTATGT 304563 Query 17277 TCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAACTTCCACG 17335 | |||||||| || || || || || ||| || |||||||||| || ||| |||| | Sbjct 304562 TTTCCATGGCAATTTGGAAGCCATAGAAATCA-CGGGCTTCCGTCATCTGAGCTTCTTGG 304504 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAAT 17395 | || ||| | || ||||| || || | ||| || || || || | || |||| Sbjct 304503 CTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAGCCAGG 304444 Query 17396 ATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTG 17455 | |||| |||||||| | | || || || | || | || || || | || | | Sbjct 304443 ACATGCGAAATGAAATGTCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAATGTCCTAG 304384 Query 17456 GATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAA 17515 || | ||||| || || | ||||| | |||| | || | ||| |||| | |||| Sbjct 304383 GAAAGGTCCACCTCCTCAGCCGTCCAGCAGGAAGCCTCAGCGTGCTTACACATCTGCCAA 304324 Query 17516 ATATCATTGTATT 17528 | |||| ||||| Sbjct 304323 ACATCACGGTATT 304311 >seq36034 Length=1448 Score = 145 bits (160), Expect = 8e-30 Identities = 320/473 (68%), Gaps = 9/473 (2%) Strand=Plus/Minus Query 16669 CATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATAT 16728 ||| || || || |||| || | || || | |||||||| || || || || || || Sbjct 554 CATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAAT 495 Query 16729 ATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCG 16786 |||| |||| || ||||| ||||| || ||||||| || | | ||||| || Sbjct 494 ATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAA--AACCCAGCTCC 437 Query 16787 GCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCT 16846 || | ||| || || |||||||| || || || ||| || ||| ||||| || Sbjct 436 AGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCA 377 Query 16847 ATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC-TTCCTT 16905 || || || || || || ||||| | || || ||||| ||| || || Sbjct 376 ATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACG 317 Query 16906 AATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACA 16965 | || | || | ||| | ||| || ||| | ||| || ||||| |||||||| || Sbjct 316 ATTATTTCTTTGA-CTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCA 258 Query 16966 TGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCC 17025 || || || || ||||| |||||||||||||| |||||||| || |||||||| | | Sbjct 257 GGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCT 198 Query 17026 GGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATAT 17085 ||||||| |||||||| || | ||| ||||||| || || || ||||||||| || Sbjct 197 GGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG---AT 141 Query 17086 ACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 || || || | |||| || | ||||| | ||||| || ||||||| Sbjct 140 TCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGT 88 >seq25410 Length=10104 Score = 134 bits (148), Expect = 1e-26 Identities = 196/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || || |||||||| || || ||||| |||||||| || || || || || || || || Sbjct 10102 AGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGG 10043 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 ||||||| || |||||||| | || || ||| | | |||| || || ||||| Sbjct 10042 GCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCA 9983 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 || || || || || || |||| | |||| |||||||||| | || || || | || Sbjct 9982 TCACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGG 9923 Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 | ||||| || | || ||||| | ||||| ||||| | |||||||| |||| Sbjct 9922 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCC 9863 Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 | || || |||||||| | ||||||||||| ||||| Sbjct 9862 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 9826 >seq549 Length=511996 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| |||||||| || |||||||| | ||||||||| |||||||| | Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574 Query 17106 C 17106 | Sbjct 260575 C 260575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517175535488040