Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 223 4e-53
seq36034 145 8e-30
seq25410 134 1e-26
seq549 102 8e-17
>seq1525
Length=329219
Score = 223 bits (246), Expect = 4e-53
Identities = 421/613 (69%), Gaps = 6/613 (1%)
Strand=Plus/Minus
Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978
|||| | ||| || ||| | ||| || ||||| |||||||| || || || || ||
Sbjct 304920 ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAG 304861
Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038
||||| |||||||||||||| |||||||| || |||||||| | ||||||||| ||||
Sbjct 304860 TGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCT 304801
Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098
|||||||| | ||| ||||||| || || || ||||||||||| || || || || |
Sbjct 304800 CGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCG 304741
Query 17099 GCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACC 17158
||||| || || | ||||| | ||||| || ||| ||| ||||| | ||
Sbjct 304740 GCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCAGCGCAAGGCC 304681
Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTT 17216
|| || || || | ||||| ||| ||| || || ||||| || | | | ||| |||
Sbjct 304680 CAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAGATTCCCTT 304621
Query 17217 TTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGT 17276
| | || | || | | || || || |||| || || |||||||| || |||||||
Sbjct 304620 TCT-TTGGA-ATCTTTAACGTAAGTGTCATTGAGGAGACTATACATTTCCGAATGTATGT 304563
Query 17277 TCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAACTTCCACG 17335
| |||||||| || || || || || ||| || |||||||||| || ||| |||| |
Sbjct 304562 TTTCCATGGCAATTTGGAAGCCATAGAAATCA-CGGGCTTCCGTCATCTGAGCTTCTTGG 304504
Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAAT 17395
| || ||| | || ||||| || || | ||| || || || || | || ||||
Sbjct 304503 CTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAGCCAGG 304444
Query 17396 ATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTG 17455
| |||| |||||||| | | || || || | || | || || || | || | |
Sbjct 304443 ACATGCGAAATGAAATGTCTCTCCTCAGGCTTCAGGGCTTCCCGGTGCTGAATGTCCTAG 304384
Query 17456 GATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAA 17515
|| | ||||| || || | ||||| | |||| | || | ||| |||| | ||||
Sbjct 304383 GAAAGGTCCACCTCCTCAGCCGTCCAGCAGGAAGCCTCAGCGTGCTTACACATCTGCCAA 304324
Query 17516 ATATCATTGTATT 17528
| |||| |||||
Sbjct 304323 ACATCACGGTATT 304311
>seq36034
Length=1448
Score = 145 bits (160), Expect = 8e-30
Identities = 320/473 (68%), Gaps = 9/473 (2%)
Strand=Plus/Minus
Query 16669 CATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATAT 16728
||| || || || |||| || | || || | |||||||| || || || || || ||
Sbjct 554 CATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAAT 495
Query 16729 ATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTTCG 16786
|||| |||| || ||||| ||||| || ||||||| || | | ||||| ||
Sbjct 494 ATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAA--AACCCAGCTCC 437
Query 16787 GCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCT 16846
|| | ||| || || |||||||| || || || ||| || ||| ||||| ||
Sbjct 436 AGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCA 377
Query 16847 ATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC-TTCCTT 16905
|| || || || || || ||||| | || || ||||| ||| || ||
Sbjct 376 ATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACG 317
Query 16906 AATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACA 16965
| || | || | ||| | ||| || ||| | ||| || ||||| |||||||| ||
Sbjct 316 ATTATTTCTTTGA-CTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCA 258
Query 16966 TGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCC 17025
|| || || || ||||| |||||||||||||| |||||||| || |||||||| | |
Sbjct 257 GGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCT 198
Query 17026 GGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATAT 17085
||||||| |||||||| || | ||| ||||||| || || || ||||||||| ||
Sbjct 197 GGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG---AT 141
Query 17086 ACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138
|| || || | |||| || | ||||| | ||||| || |||||||
Sbjct 140 TCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGT 88
>seq25410
Length=10104
Score = 134 bits (148), Expect = 1e-26
Identities = 196/277 (71%), Gaps = 0/277 (0%)
Strand=Plus/Minus
Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311
|| || |||||||| || || ||||| |||||||| || || || || || || || ||
Sbjct 10102 AGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGG 10043
Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371
||||||| || |||||||| | || || ||| | | |||| || || |||||
Sbjct 10042 GCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCA 9983
Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431
|| || || || || || |||| | |||| |||||||||| | || || || | ||
Sbjct 9982 TCACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGG 9923
Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491
| ||||| || | || ||||| | ||||| ||||| | |||||||| ||||
Sbjct 9922 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCC 9863
Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528
| || || |||||||| | ||||||||||| |||||
Sbjct 9862 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 9826
>seq549
Length=511996
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
||||||||||||| |||||||| || |||||||| | ||||||||| |||||||| |
Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||||| || || || ||||||||||| || || || || | ||||| |
Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574
Query 17106 C 17106
|
Sbjct 260575 C 260575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517175535488040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |