Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1525 226 3e-54 seq25410 147 2e-30 seq36034 138 1e-27 seq1670 114 1e-20 seq549 93.3 4e-14 >seq1525 Length=329219 Score = 226 bits (250), Expect = 3e-54 Identities = 412/601 (69%), Gaps = 4/601 (1%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||||||| ||||| || || || ||||| || |||| || ||||||||||| |||||| Sbjct 304893 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGT 304834 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || ||||| |||||||||||| | ||||||||||| ||| Sbjct 304833 TCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 304774 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || || | ||||| || || | ||||| | ||| Sbjct 304773 AAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATAC 304714 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||| | | ||||| | |||| || || || | |||| |||| | Sbjct 304713 GTAGCCTCTGTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGC 304654 Query 16424 ATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 || || || ||||| || | | | ||| |||| | || ||| | | || || | Sbjct 304653 ATTGTCTCAATGGCGTTGAAGAGAGATTCCCTTTCTTTGGA--ATCTTTAACGTAAGTGT 304596 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 || | || | ||| |||||||| || |||||||| || ||||| || || || ||||||| Sbjct 304595 CATTGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGA 304536 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || |||| || || |||| | || || ||| ||||||| ||||| | Sbjct 304535 AATCACGGGCTTCCGTCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTA 304476 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG 16661 | | || |||||||| ||| | || |||| | ||| |||||||| | | || |||| Sbjct 304475 CTACGCCATCACTTGCTGCAGAGAAAGCCAGGACATGCGAAATGAAATGTCTCTCCTCAG 304416 Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721 | || | || | | | || | ||| | ||||| || || | |||||| Sbjct 304415 GCTTCAGGGCTTCCCGGTGCTGAATGTCCTAGGAAAGGTCCACCTCCTCAGCCGTCCAGC 304356 Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGA 16781 || |||| | || | ||| |||| | ||||| |||| ||||| || ||||| | || Sbjct 304355 AGGAAGCCTCAGCGTGCTTACACATCTGCCAAACATCACGGTATTCGATAGGAAAGAAGA 304296 Query 16782 C 16782 | Sbjct 304295 C 304295 >seq25410 Length=10104 Score = 147 bits (162), Expect = 2e-30 Identities = 207/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| |||||||| || || ||||| || ||||| || || || |||||||| || | || Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 |||| || || ||||| | ||| || ||| ||| | | ||||| || || || || Sbjct 10040 TTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATC 9981 Query 16612 ACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAAT 16671 |||||| ||||| || |||| | ||| |||||||||| | || |||| | || Sbjct 9980 ACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 9921 Query 16672 ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCAC 16731 | ||| | | | || ||||| | ||||| ||||| | ||||||||| |||| | Sbjct 9920 TTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTC 9861 Query 16732 TGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || || |||||||| | ||||||||||| ||||| || ||||| | ||| Sbjct 9860 AGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGAC 9810 >seq36034 Length=1448 Score = 138 bits (152), Expect = 1e-27 Identities = 296/438 (68%), Gaps = 7/438 (2%) Strand=Plus/Minus Query 15939 AGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG-C 15996 |||||||||| || || || | || ||||| ||||||| ||||| ||||| || | Sbjct 522 AGAAGTTAGTCTTCCCTTCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTC 463 Query 15997 TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATA 16056 |||||| ||| | ||||| ||| | | ||| ||||| |||||||| || || Sbjct 462 TGAAAAC--CTTGCTAAAACCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTA 405 Query 16057 TTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAA 16116 || ||| || |||||| || || || || || || || || | || | || Sbjct 404 CTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAA 345 Query 16117 TTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGT 16176 | ||||||||| ||| || | || || || || ||| || || ||| | Sbjct 344 CTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTT 285 Query 16177 ATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCT 16236 || |||||||| ||||| || || || ||||| || |||| || ||||||||||| Sbjct 284 GTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCT 225 Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 |||||||| |||||||| || | | ||||| |||||||| || | ||||||||| Sbjct 224 AATAAGTTCATTGGAAAATGTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATAT 165 Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 || ||||| || || |||||| || || || || | |||| || | ||||| Sbjct 164 CGATGCAAAAGAACCAGAAAAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTC 108 Query 16357 CGCGTACGTAGCATCTTT 16374 | |||||||| ||||| Sbjct 107 TCCATACGTAGCCTCTTT 90 >seq1670 Length=315515 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| ||||| ||||| Sbjct 206374 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 206433 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 206434 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 206493 Query 16344 C 16344 | Sbjct 206494 C 206494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 184386 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 184445 Query 15985 GGGATT 15990 |||||| Sbjct 184446 GGGATT 184451 >seq549 Length=511996 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| |||||||| || Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 260575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511048719525960