Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 221 1e-52
seq15026 161 8e-35
>seq18172
Length=33122
Score = 221 bits (244), Expect = 1e-52
Identities = 535/809 (66%), Gaps = 7/809 (1%)
Strand=Plus/Plus
Query 18538 TTCGGAAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGAT 18597
||||||| || || || || | ||| || | || | || || ||||| || || |
Sbjct 26787 TTCGGAAGGATGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCT 26846
Query 18598 ACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCG 18657
||| || || ||||||||||||| | || || || ||||||| || | || ||
Sbjct 26847 ACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAATGTGTTTTCTGCAAGGGTGTTT 26906
Query 18658 TGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAG 18717
||| |||||| | ||||||||| || || || | | || || || | | || |
Sbjct 26907 CGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGG 26966
Query 18718 ATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATA 18777
| | || |||||| | || || | | || | | || || ||| |
Sbjct 26967 GAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCA 27026
Query 18778 AAAGA-CACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCG 18836
||| || | |||| | | ||||| |||| ||||| |||||||| |||||||| |
Sbjct 27027 CCAGAGCAGAAGGGG-ATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGACC 27085
Query 18837 GAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTT 18896
||||| ||||| || ||| | |||| | | |||||| | ||||| ||||||| ||
Sbjct 27086 GAATACAAAGATATGCATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTG 27145
Query 18897 ATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA 18956
| || ||||| ||||| ||||| || | || |||| || | | ||||||||||
Sbjct 27146 ACTGACACAATCAAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCG 27205
Query 18957 AAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCA 19016
|| ||| |||| | |||| ||||| || || ||| | | || ||||| ||||| |
Sbjct 27206 AAAGATCTCCCTCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTG 27265
Query 19017 AACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076
|||||||| | |||||||| | |||||||| || || || |||||||| | || ||
Sbjct 27266 AACGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGRGTGTGCCC 27325
Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136
|||| ||| || | || || || || |||| | || || || | || ||
Sbjct 27326 TTCARCATCGCCAGCTACGCCCTGCT-----ACATGATCGCACACACCACGCGCCTGAAG 27380
Query 19137 ACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT 19196
| || || || | || || |||| |||||||| |||||| ||||||| || || |
Sbjct 27381 CCAGGTGACTTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCG 27440
Query 19197 TTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAAT 19256
| ||| | ||||| ||| |||| ||||| || || | ||| |||||||
Sbjct 27441 CTGAAAATTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAA 27500
Query 19257 GTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAc 19316
|| | || | ||||| || || || |||||| |||| || || ||||| |||
Sbjct 27501 GTTGAGAAAATTGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCAC 27560
Query 19317 cccccccTAAAAATGGAAATGGCTCTTTA 19345
|| | | ||||||||||||||| ||||
Sbjct 27561 CCGACTATTAAAATGGAAATGGCTGTTTA 27589
>seq15026
Length=49095
Score = 161 bits (178), Expect = 8e-35
Identities = 380/566 (67%), Gaps = 12/566 (2%)
Strand=Plus/Minus
Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848
||||| | ||||| |||| |||| |||||||| | ||| | || ||||| |||||
Sbjct 47066 GGGGATTTAGGCCCAGTTTATAGCTTTCAGTGGAGGCCTTTGGTGGCTGAATACAAAGA- 47008
Query 18849 TGTCAATCAAACT--ATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906
||| || || | ||| || |||||| | || || ||||||| || || || ||||
Sbjct 47007 TGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAA 46948
Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966
| ||||| ||||| ||| | || |||| ||| ||| ||||||||| |||| |||
Sbjct 46947 TCAAAACCAACCCTGAAGACAGAAGAATCATTCTATGTGCTTGGAATCAAAAGATCTTCC 46888
Query 18967 CCTTAA----TGGTAC--TACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACG 19020
|| | || || | || | || || | || || || || ||||| | |||
Sbjct 46887 TCTCATACCCTGCCACCCTGCCCCTGTGCCATGCCTTTTGCCACTTCTACGTGGTGAACC 46828
Query 19021 GTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCA 19080
||| | |||||| | | |||||||| || || || | |||||| || || | ||||
Sbjct 46827 ATGAGCTGTCCTGC-AGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCA 46769
Query 19081 ACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCG 19140
|| | || | ||||| || || |||||||| | || || | ||||| || || | |
Sbjct 46768 ACGTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAG 46709
Query 19141 GAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT-TA 19199
| || | | || || |||| |||||||| |||||| || |||| || || ||| |
Sbjct 46708 GTGACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGA-GCTGCTG 46650
Query 19200 AAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTA 19259
||| ||||||| || ||| ||||| | || ||||| || |||| ||
Sbjct 46649 AAAATGCAGCTTCAGGGAGAATCAAGGCCTTTCCTAAAGCTCAAAATCCTTGGAAAAGTT 46590
Query 19260 ACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAcccc 19319
| || | ||||| ||| || || |||||| |||| || || | ||| || |||
Sbjct 46589 GAGAAAATCGATGACTTCAAAGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCC 46530
Query 19320 ccccTAAAAATGGAAATGGCTCTTTA 19345
| | ||||||||||||||| ||||
Sbjct 46529 ACTATTAAAATGGAAATGGCTGTTTA 46504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399225481167135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |