Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq18172 221 1e-52 seq15026 161 8e-35 >seq18172 Length=33122 Score = 221 bits (244), Expect = 1e-52 Identities = 535/809 (66%), Gaps = 7/809 (1%) Strand=Plus/Plus Query 18538 TTCGGAAACGCGATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGAT 18597 ||||||| || || || || | ||| || | || | || || ||||| || || | Sbjct 26787 TTCGGAAGGATGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCT 26846 Query 18598 ACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCG 18657 ||| || || ||||||||||||| | || || || ||||||| || | || || Sbjct 26847 ACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAATGTGTTTTCTGCAAGGGTGTTT 26906 Query 18658 TGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAG 18717 ||| |||||| | ||||||||| || || || | | || || || | | || | Sbjct 26907 CGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGG 26966 Query 18718 ATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATA 18777 | | || |||||| | || || | | || | | || || ||| | Sbjct 26967 GAGTGAAAATCTGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCA 27026 Query 18778 AAAGA-CACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCG 18836 ||| || | |||| | | ||||| |||| ||||| |||||||| |||||||| | Sbjct 27027 CCAGAGCAGAAGGGG-ATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGACC 27085 Query 18837 GAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTT 18896 ||||| ||||| || ||| | |||| | | |||||| | ||||| ||||||| || Sbjct 27086 GAATACAAAGATATGCATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTG 27145 Query 18897 ATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCA 18956 | || ||||| ||||| ||||| || | || |||| || | | |||||||||| Sbjct 27146 ACTGACACAATCAAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCG 27205 Query 18957 AAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCA 19016 || ||| |||| | |||| ||||| || || ||| | | || ||||| ||||| | Sbjct 27206 AAAGATCTCCCTCTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTG 27265 Query 19017 AACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCG 19076 |||||||| | |||||||| | |||||||| || || || |||||||| | || || Sbjct 27266 AACGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGRGTGTGCCC 27325 Query 19077 TTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 |||| ||| || | || || || || |||| | || || || | || || Sbjct 27326 TTCARCATCGCCAGCTACGCCCTGCT-----ACATGATCGCACACACCACGCGCCTGAAG 27380 Query 19137 ACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCT 19196 | || || || | || || |||| |||||||| |||||| ||||||| || || | Sbjct 27381 CCAGGTGACTTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCG 27440 Query 19197 TTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAAT 19256 | ||| | ||||| ||| |||| ||||| || || | ||| ||||||| Sbjct 27441 CTGAAAATTCAGCTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAA 27500 Query 19257 GTAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAc 19316 || | || | ||||| || || || |||||| |||| || || ||||| ||| Sbjct 27501 GTTGAGAAAATTGATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCAC 27560 Query 19317 cccccccTAAAAATGGAAATGGCTCTTTA 19345 || | | ||||||||||||||| |||| Sbjct 27561 CCGACTATTAAAATGGAAATGGCTGTTTA 27589 >seq15026 Length=49095 Score = 161 bits (178), Expect = 8e-35 Identities = 380/566 (67%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| | ||||| |||| |||| |||||||| | ||| | || ||||| ||||| Sbjct 47066 GGGGATTTAGGCCCAGTTTATAGCTTTCAGTGGAGGCCTTTGGTGGCTGAATACAAAGA- 47008 Query 18849 TGTCAATCAAACT--ATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||| || || | ||| || |||||| | || || ||||||| || || || |||| Sbjct 47007 TGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGACACAA 46948 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | ||||| ||||| ||| | || |||| ||| ||| ||||||||| |||| ||| Sbjct 46947 TCAAAACCAACCCTGAAGACAGAAGAATCATTCTATGTGCTTGGAATCAAAAGATCTTCC 46888 Query 18967 CCTTAA----TGGTAC--TACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACG 19020 || | || || | || | || || | || || || || ||||| | ||| Sbjct 46887 TCTCATACCCTGCCACCCTGCCCCTGTGCCATGCCTTTTGCCACTTCTACGTGGTGAACC 46828 Query 19021 GTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCA 19080 ||| | |||||| | | |||||||| || || || | |||||| || || | |||| Sbjct 46827 ATGAGCTGTCCTGC-AGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTCCTTCA 46769 Query 19081 ACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCG 19140 || | || | ||||| || || |||||||| | || || | ||||| || || | | Sbjct 46768 ACGTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAAGCCAG 46709 Query 19141 GAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT-TA 19199 | || | | || || |||| |||||||| |||||| || |||| || || ||| | Sbjct 46708 GTGACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGA-GCTGCTG 46650 Query 19200 AAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTA 19259 ||| ||||||| || ||| ||||| | || ||||| || |||| || Sbjct 46649 AAAATGCAGCTTCAGGGAGAATCAAGGCCTTTCCTAAAGCTCAAAATCCTTGGAAAAGTT 46590 Query 19260 ACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAcccc 19319 | || | ||||| ||| || || |||||| |||| || || | ||| || ||| Sbjct 46589 GAGAAAATCGATGACTTCAAAGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCATCCC 46530 Query 19320 ccccTAAAAATGGAAATGGCTCTTTA 19345 | | ||||||||||||||| |||| Sbjct 46529 ACTATTAAAATGGAAATGGCTGTTTA 46504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399225481167135