Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq18093 91.5 1e-13 seq17051 82.4 7e-11 >seq18093 Length=33488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 || |||||||| || ||| | || || ||||| ||||| ||||| ||| || ||| Sbjct 3032 GTCAAAATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAG 2973 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 ||| || || | | | | ||| || || ||||||||||| | ||| Sbjct 2972 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCT 2913 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || || |||||||| |||||||| ||||||||| | | ||| | | ||| Sbjct 2912 GACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCTTTCTGAT 2853 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| || ||||| || ||||| || ||| |||| Sbjct 2852 TACAACATCCAGAAAGAGTCTACCCTGCACCTGGT 2818 >seq17051 Length=38469 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | || || ||||||| || ||||| || ||| |||||| Sbjct 11244 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 11303 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || ||| | | ||| || || || || ||||| | || | || Sbjct 11304 TCGGATACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGAC 11363 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 | |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 11364 CGGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 11423 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| || |||||||| | ||||| Sbjct 11424 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 11458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428037380604965