Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq11523 295 8e-75 seq1843 221 1e-52 seq228 168 8e-37 seq264 122 1e-22 seq1958 107 2e-18 seq5180 84.2 3e-11 seq2623 84.2 3e-11 >seq11523 Length=73370 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| ||||| || ||||| | | | | |||| | ||||| ||||||||||||| Sbjct 51659 AGCAGGGCTTCGATATCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGT 51600 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 ||||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 51599 ACGGGAACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACGTCGTTGCGG 51540 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 51539 CACACCGGAGACCAGGTGATGAACTTGGGGTCTGTCATGAGGGCAGTGGCGTCGTCACTG 51480 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 51479 GGCGTGGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGGGCCTTCTCGCCATTCACC 51420 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| ||| || || || |||| ||| Sbjct 51419 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGTACGTACTTG 51360 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || ||||||||| | |||| ||| |||||||| Sbjct 51359 AGGCAATTCAAGATCTCCTCGTTCTTGGCATTTTCCTG 51322 Score = 183 bits (202), Expect = 4e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 51048 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGACCCGAGGC 50989 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| |||||||| || | |||||||| ||||| | Sbjct 50988 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGGACAGTTGTGCCTCAGAGCGACGCCA 50929 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | | || ||| |||| || || || |||| Sbjct 50928 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGACCCCAAGTTCACGGGCTCCCCGCCGG 50869 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||||||||| || Sbjct 50868 CCAGCGGGCGCGCAGAGAAGGCGTACACCGA 50838 >seq1843 Length=300419 Score = 221 bits (244), Expect = 1e-52 Identities = 282/389 (72%), Gaps = 11/389 (3%) Strand=Plus/Minus Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 ||||||||| || |||| ||||| ||||||||| |||| || ||||||| || ||| Sbjct 24542 CCAGGCCACTTCTTTGCCACACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCCTGAG 24483 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277 | | | || | || |||| ||||| ||||| || ||||||||||||||||| | Sbjct 24482 GGCAGTGGCGGCGACACTGGGCGTGGGCAGAGCCTCGCGAAGGAAGGCGAAGAGCGGGTA 24423 Query 83278 TGCCCTTGCACCGTTGACCTCGC--------ACTTCTCGAAGAGCATAAAGTTCGGCTCG 83329 ||| | || || ||||||| |||||||||||||||| ||||| |||||| Sbjct 24422 CGCCTGCGAGCCATTCACCTCGCGCTTCTCCACTTCTCGAAGAGCATGAAGTTGGGCTCG 24363 Query 83330 AAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTT 83389 || | ||| || || | ||||| ||| ||| || || ||||||| || ||||||||| Sbjct 24362 AACCTGTTGCCTGGTCTGACGTACTTGAGGCAATTCAGGATCTCG---TTTTGGGCGTTT 24306 Query 83390 TCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 ||||| | || ||| |||| |||| ||| | ||||| ||||| || || | || ||| Sbjct 24305 TCCTGATACCCAAACCGGTTGCACGTGAAGCTGAGCACGACCAGGCCTCGGGGCCCGAGG 24246 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 ||||| |||||| |||| ||| |||| ||| ||||| | |||| ||| || || Sbjct 24245 AGCCGCCTCAGCTCCTTCACCTGGGTGTCGTCCTGGACCCCTGTGCCTCCGAGCGATGCC 24186 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538 | || ||| ||||||| | ||| ||||| Sbjct 24185 AAGTCCTCAATGAGCAGGGCCCTACCCCG 24157 >seq228 Length=692501 Score = 168 bits (186), Expect = 8e-37 Identities = 244/343 (71%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||||||||||||||| | ||||| | | | |||||| | ||||| |||||||| Sbjct 218302 GGGGCAGCAGGGCCTCGATGACAGGCTCGAGGTCGAGGGTCAGAAAGCGGCGGCTGTACG 218361 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGT 83171 || |||||| | ||||| ||||||| || ||||| ||||||||||| |||||| Sbjct 218362 TGTGCACGG-CACACCGTCCAGGCCCACCAGGAGCTTCTGGAAGTTCCAGGGGACGTCGC 218420 Query 83172 TGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGT 83231 ||| || | ||||||||||| | ||||| ||||||| ||||||| | |||| Sbjct 218421 TGCCACAAGCCGGAGACCAGGCGAGGAGCTCGGGGTCGGTCACGAGGGCAGGGGCGTCGA 218480 Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGT 83291 | || | || |||| ||||| | | ||||||||||||| || ||| || |||| Sbjct 218481 CACTGGCCGTGCGCAGCGCCTCGC----GGAGGCGAAGAGCGGGTGCGCCTGCGCGCCGT 218536 Query 83292 TGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGT 83351 | |||||| ||| | |||| | | |||||||| ||| | || ||||||| Sbjct 218537 TCCCCTCGCCCTTGGCCCGGAGCCTGAGCCCGGGCTCGAACCCGCCGTCTGGTCGGACGT 218596 Query 83352 GCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | | ||| || |||||| |||||| ||| |||||||| Sbjct 218597 ACCTGAGGCCCTTCAGGATCTCCTCATTCTTGGCATTTTCCTG 218639 Score = 116 bits (128), Expect = 5e-21 Identities = 159/216 (74%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT-AGG 83449 |||| || | ||||| || | |||||| || ||| | ||||| ||| | || || ||| Sbjct 218900 CCTGTTGCCTAAACTGCTTGCTCGGGAAGCCGAGCGCGACCAGGCCCGGGGCCCCCGAGG 218959 Query 83450 ---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTA-CCTCAGAGGGA 83505 |||||||||||||| |||||||| |||| |||||| |||| ||| |||| ||| || Sbjct 218960 TGCCGCCGCTGCAGCTCATTCATCTGGGTGTGGTCCCGGGCCGT-CTAGCCTCCGAGCGA 219018 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCC 83565 ||| |||||||| |||||| || | || | | | |||| | |||||| ||||| || Sbjct 219019 CGCCACGTTCTCAGTGAGCAGCGCCTTGGCCTGCAGGGAGCCCAGGCTCACGGGTTCCCC 219078 Query 83566 TCCGGTAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 |||| | |||||| || | | ||| | || |||| Sbjct 219079 ACCGGCCAGCGGGCGCGCAGCGGAGG-GGACGCAGA 219113 >seq264 Length=668389 Score = 122 bits (134), Expect = 1e-22 Identities = 192/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || |||||| || || ||| Sbjct 488709 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCACGCCTGC 488651 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 488650 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 488591 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 488590 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 488532 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| ||||| ||| || || ||||| |||| ||| ||||| ||| Sbjct 488531 GTGCAGCTGCTCTACCCGCGGGCCAAGAATGACCGCGTCTGGA-CACTGGAGTTCGTGGG 488473 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 488472 CAAACTGGACGAGCGCTGCCGGCGCCG 488446 >seq1958 Length=291819 Score = 107 bits (118), Expect = 2e-18 Identities = 159/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| || | || |||||||| | || ||| | ||| ||||||||||| | | || Sbjct 126556 CAGGGCTTCAACGTTGGGCTCCATGTCCCTGGTTGGAAAGCAGTGGCTGTACCCGTGTAC 126615 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| || | ||||||| | ||||||| ||||||||||||||||| ||| ||| Sbjct 126616 AGGCACATTGTTGGGGCCCACCAGGGACTTCTCCAAGTTCCAGGCCACGTCACTGCAGCA 126675 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||||| || ||||| | | || |||| | ||| | | | | || ||| | | Sbjct 126676 CACTGAAGGCCAGGTGAAGTTCTTGGGGCCAGTCATGGGTGCAGGGACGTTGTCATTGGA 126735 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||||||||| ||||| | | |||||| ||||||| ||||||| Sbjct 126736 CGCCGGCAGAGCCTCAGGAAAGAAGGC-AAGAGCGAGTGTGCCC 126778 >seq5180 Length=157646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 226/342 (66%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||||||||| | | | ||| || || | ||||||| | || Sbjct 41607 GAGGAGGCGCTTGATGTCGGGCTCGATGTTGATGGTTGGGAAGGTGCGGCTGTAGCGCCG 41666 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | ||| || || | || | | ||||||||| |||||||| | |||||| ||| Sbjct 41667 AAAGGGTTCCCCCTCTGGCCCGATGAGGAACTTCTCAAAGTTCCAAGACACGTCTGAGCG 41726 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 | |||||| ||| |||| || ||| ||| ||| ||| | | ||||||| | Sbjct 41727 GTGCACTGGGCTCCAAATGATGAACTTGGGATCGGTCATGAGGGAAAACGGGTCGTCG-T 41785 Query 83236 AGGCGCCGGCAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTG 83293 | | | || | || | || | ||| ||| ||||| ||||| | | ||| || Sbjct 41786 AAGGGTAGG-GGAGCTTATCCTTCAGGTAGGTGAAGACAGGATGCTCATTCTGACCATTC 41844 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 || || ||||| | || || ||||| | |||| ||| || |||||| ||||||| | Sbjct 41845 ACGTCACACTTTTGGATAAGGGTAAAGGTGGGCTGGAATCCACCCCCAGGGCGGACGTAC 41904 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 || ||| || |||||| ||||||| ||| |||||| Sbjct 41905 TTGAGGCTGTTCAGGATCTCCTCATTCTGACAGTTCTCCTGG 41946 >seq2623 Length=246756 Score = 84.2 bits (92), Expect = 3e-11 Identities = 298/458 (65%), Gaps = 36/458 (8%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||| || |||||||| || ||||||| |||||| | || ||||| ||||||| Sbjct 12116 GAACTTCTTTAACTTCCAGGCAACATCGTTGCAGCACACAG-AGCCCAGGTGATGAGCTT 12058 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 || || | ||| || ||||| || ||| |||| ||||| | ||||| Sbjct 12057 GGAATCTGTTGAAAGCA-GCGGTTGTCGGCG---GGCTAGGGCAAGGCCTTCCACAGGAA 12002 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCA--CCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 |||| | ||| | |||| ||| || || | | | ||||||| ||| ||| | | Sbjct 12001 GGCGCAAAGCAG--GTGCATCTGCGTGCCATTCATCACACACTTCTGGAAAAGCGTGA-- 11946 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 || || || | |||| |||||| || | |||| | | Sbjct 11945 -TCATCTTTAAT-----------------GAGCTTGAGGGAATTCAGGCTCTCTTGGTAC 11904 Query 83381 TGGGCGTTTTCCTGGTGACCG-AACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCG 83439 | || ||| ||||| || | | |||||||| ||||| || ||||||||||| || | Sbjct 11903 TTGGTGTTCTCCTGATGCCTGGAACTGGTTGTGTGGGAAGCCCAGCACTACCAGGCCTGG 11844 Query 83440 AGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCA 83499 || || |||||||||||| ||||||||||||| | || | |||| | | || || Sbjct 11843 GGCAA--AGTTGCCGCTGCAGCTGGTTCATCTGAGTGCAGTCTCAGACCTTTGTGCCGCA 11786 Query 83500 GAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGG 83559 ||| | || | ||||| ||||| | ||| ||| | | ||| | |||| |||| Sbjct 11785 GAGCAATGCCGCTTTCTCAATGAGTAGCACCGTGCCAGGCTGGGTGCCCAGGCTCCCAGG 11726 Query 83560 TTCTCCTCCGG--TAATCGGGCGTGCTGAGAAGGCGTA 83595 || ||| || ||| |||| | | ||||||| ||| Sbjct 11725 CTC-CCTGAGGGCTAA-CGGGTGCACAGAGAAGGTGTA 11690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608361487458120