Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq11523 295 8e-75
seq1843 221 1e-52
seq228 168 8e-37
seq264 122 1e-22
seq1958 107 2e-18
seq5180 84.2 3e-11
seq2623 84.2 3e-11
>seq11523
Length=73370
Score = 295 bits (326), Expect = 8e-75
Identities = 268/338 (79%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| ||||| || ||||| | | | | |||| | ||||| |||||||||||||
Sbjct 51659 AGCAGGGCTTCGATATCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGT 51600
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
||||| ||||| | ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 51599 ACGGGAACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACGTCGTTGCGG 51540
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| |||||||||| |||| || |||||| ||| ||| | | |||||| ||
Sbjct 51539 CACACCGGAGACCAGGTGATGAACTTGGGGTCTGTCATGAGGGCAGTGGCGTCGTCACTG 51480
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||| ||||| ||||| || |||||||||||||||||||| ||| | | || || |||
Sbjct 51479 GGCGTGGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGGGCCTTCTCGCCATTCACC 51420
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||||| ||||| |||||||| ||| || || || |||| |||
Sbjct 51419 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGTACGTACTTG 51360
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || ||||||||| | |||| ||| ||||||||
Sbjct 51359 AGGCAATTCAAGATCTCCTCGTTCTTGGCATTTTCCTG 51322
Score = 183 bits (202), Expect = 4e-41
Identities = 167/211 (79%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | || ||||
Sbjct 51048 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGACCCGAGGC 50989
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||| || |||||||| ||||| |||||||| || | |||||||| ||||| |
Sbjct 50988 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGGACAGTTGTGCCTCAGAGCGACGCCA 50929
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||| ||||||| ||| |||||| | | | || ||| |||| || || || ||||
Sbjct 50928 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGACCCCAAGTTCACGGGCTCCCCGCCGG 50869
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
| |||||| || |||||||||||||| ||
Sbjct 50868 CCAGCGGGCGCGCAGAGAAGGCGTACACCGA 50838
>seq1843
Length=300419
Score = 221 bits (244), Expect = 1e-52
Identities = 282/389 (72%), Gaps = 11/389 (3%)
Strand=Plus/Minus
Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217
||||||||| || |||| ||||| ||||||||| |||| || ||||||| || |||
Sbjct 24542 CCAGGCCACTTCTTTGCCACACACCAGAGACCAGGTGATGAACTTGGGGTCGGTCCTGAG 24483
Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277
| | | || | || |||| ||||| ||||| || ||||||||||||||||| |
Sbjct 24482 GGCAGTGGCGGCGACACTGGGCGTGGGCAGAGCCTCGCGAAGGAAGGCGAAGAGCGGGTA 24423
Query 83278 TGCCCTTGCACCGTTGACCTCGC--------ACTTCTCGAAGAGCATAAAGTTCGGCTCG 83329
||| | || || ||||||| |||||||||||||||| ||||| ||||||
Sbjct 24422 CGCCTGCGAGCCATTCACCTCGCGCTTCTCCACTTCTCGAAGAGCATGAAGTTGGGCTCG 24363
Query 83330 AAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTT 83389
|| | ||| || || | ||||| ||| ||| || || ||||||| || |||||||||
Sbjct 24362 AACCTGTTGCCTGGTCTGACGTACTTGAGGCAATTCAGGATCTCG---TTTTGGGCGTTT 24306
Query 83390 TCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449
||||| | || ||| |||| |||| ||| | ||||| ||||| || || | || |||
Sbjct 24305 TCCTGATACCCAAACCGGTTGCACGTGAAGCTGAGCACGACCAGGCCTCGGGGCCCGAGG 24246
Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509
||||| |||||| |||| ||| |||| ||| ||||| | |||| ||| || ||
Sbjct 24245 AGCCGCCTCAGCTCCTTCACCTGGGTGTCGTCCTGGACCCCTGTGCCTCCGAGCGATGCC 24186
Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCG 83538
| || ||| ||||||| | ||| |||||
Sbjct 24185 AAGTCCTCAATGAGCAGGGCCCTACCCCG 24157
>seq228
Length=692501
Score = 168 bits (186), Expect = 8e-37
Identities = 244/343 (71%), Gaps = 5/343 (1%)
Strand=Plus/Plus
Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111
|||| ||||||||||||||| | ||||| | | | |||||| | ||||| ||||||||
Sbjct 218302 GGGGCAGCAGGGCCTCGATGACAGGCTCGAGGTCGAGGGTCAGAAAGCGGCGGCTGTACG 218361
Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGT 83171
|| |||||| | ||||| ||||||| || ||||| ||||||||||| ||||||
Sbjct 218362 TGTGCACGG-CACACCGTCCAGGCCCACCAGGAGCTTCTGGAAGTTCCAGGGGACGTCGC 218420
Query 83172 TGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGT 83231
||| || | ||||||||||| | ||||| ||||||| ||||||| | ||||
Sbjct 218421 TGCCACAAGCCGGAGACCAGGCGAGGAGCTCGGGGTCGGTCACGAGGGCAGGGGCGTCGA 218480
Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGT 83291
| || | || |||| ||||| | | ||||||||||||| || ||| || ||||
Sbjct 218481 CACTGGCCGTGCGCAGCGCCTCGC----GGAGGCGAAGAGCGGGTGCGCCTGCGCGCCGT 218536
Query 83292 TGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGT 83351
| |||||| ||| | |||| | | |||||||| ||| | || |||||||
Sbjct 218537 TCCCCTCGCCCTTGGCCCGGAGCCTGAGCCCGGGCTCGAACCCGCCGTCTGGTCGGACGT 218596
Query 83352 GCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
| | ||| || |||||| |||||| ||| ||||||||
Sbjct 218597 ACCTGAGGCCCTTCAGGATCTCCTCATTCTTGGCATTTTCCTG 218639
Score = 116 bits (128), Expect = 5e-21
Identities = 159/216 (74%), Gaps = 7/216 (3%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT-AGG 83449
|||| || | ||||| || | |||||| || ||| | ||||| ||| | || || |||
Sbjct 218900 CCTGTTGCCTAAACTGCTTGCTCGGGAAGCCGAGCGCGACCAGGCCCGGGGCCCCCGAGG 218959
Query 83450 ---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTA-CCTCAGAGGGA 83505
|||||||||||||| |||||||| |||| |||||| |||| ||| |||| ||| ||
Sbjct 218960 TGCCGCCGCTGCAGCTCATTCATCTGGGTGTGGTCCCGGGCCGT-CTAGCCTCCGAGCGA 219018
Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCC 83565
||| |||||||| |||||| || | || | | | |||| | |||||| ||||| ||
Sbjct 219019 CGCCACGTTCTCAGTGAGCAGCGCCTTGGCCTGCAGGGAGCCCAGGCTCACGGGTTCCCC 219078
Query 83566 TCCGGTAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
|||| | |||||| || | | ||| | || ||||
Sbjct 219079 ACCGGCCAGCGGGCGCGCAGCGGAGG-GGACGCAGA 219113
>seq264
Length=668389
Score = 122 bits (134), Expect = 1e-22
Identities = 192/267 (72%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| || |||||| || || |||
Sbjct 488709 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCACGCCTGC 488651
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
||||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 488650 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 488591
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || |||||| ||| | | |||| |||||
Sbjct 488590 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 488532
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646
|||||| |||| ||||| ||| || || ||||| |||| ||| ||||| |||
Sbjct 488531 GTGCAGCTGCTCTACCCGCGGGCCAAGAATGACCGCGTCTGGA-CACTGGAGTTCGTGGG 488473
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673
|||||||||||||||||||||||
Sbjct 488472 CAAACTGGACGAGCGCTGCCGGCGCCG 488446
>seq1958
Length=291819
Score = 107 bits (118), Expect = 2e-18
Identities = 159/224 (71%), Gaps = 1/224 (0%)
Strand=Plus/Plus
Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118
|||||| || | || |||||||| | || ||| | ||| ||||||||||| | | ||
Sbjct 126556 CAGGGCTTCAACGTTGGGCTCCATGTCCCTGGTTGGAAAGCAGTGGCTGTACCCGTGTAC 126615
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
||| || | ||||||| | ||||||| ||||||||||||||||| ||| |||
Sbjct 126616 AGGCACATTGTTGGGGCCCACCAGGGACTTCTCCAAGTTCCAGGCCACGTCACTGCAGCA 126675
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
||||| || ||||| | | || |||| | ||| | | | | || ||| | |
Sbjct 126676 CACTGAAGGCCAGGTGAAGTTCTTGGGGCCAGTCATGGGTGCAGGGACGTTGTCATTGGA 126735
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282
||||||||| ||||| | | |||||| ||||||| |||||||
Sbjct 126736 CGCCGGCAGAGCCTCAGGAAAGAAGGC-AAGAGCGAGTGTGCCC 126778
>seq5180
Length=157646
Score = 84.2 bits (92), Expect = 3e-11
Identities = 226/342 (66%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115
||| ||| || |||||||||||| | | | ||| || || | ||||||| | ||
Sbjct 41607 GAGGAGGCGCTTGATGTCGGGCTCGATGTTGATGGTTGGGAAGGTGCGGCTGTAGCGCCG 41666
Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175
| ||| || || | || | | ||||||||| |||||||| | |||||| |||
Sbjct 41667 AAAGGGTTCCCCCTCTGGCCCGATGAGGAACTTCTCAAAGTTCCAAGACACGTCTGAGCG 41726
Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235
| |||||| ||| |||| || ||| ||| ||| ||| | | ||||||| |
Sbjct 41727 GTGCACTGGGCTCCAAATGATGAACTTGGGATCGGTCATGAGGGAAAACGGGTCGTCG-T 41785
Query 83236 AGGCGCCGGCAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTG 83293
| | | || | || | || | ||| ||| ||||| ||||| | | ||| ||
Sbjct 41786 AAGGGTAGG-GGAGCTTATCCTTCAGGTAGGTGAAGACAGGATGCTCATTCTGACCATTC 41844
Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353
|| || ||||| | || || ||||| | |||| ||| || |||||| ||||||| |
Sbjct 41845 ACGTCACACTTTTGGATAAGGGTAAAGGTGGGCTGGAATCCACCCCCAGGGCGGACGTAC 41904
Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395
|| ||| || |||||| ||||||| ||| ||||||
Sbjct 41905 TTGAGGCTGTTCAGGATCTCCTCATTCTGACAGTTCTCCTGG 41946
>seq2623
Length=246756
Score = 84.2 bits (92), Expect = 3e-11
Identities = 298/458 (65%), Gaps = 36/458 (8%)
Strand=Plus/Minus
Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202
|||||||| || |||||||| || ||||||| |||||| | || ||||| |||||||
Sbjct 12116 GAACTTCTTTAACTTCCAGGCAACATCGTTGCAGCACACAG-AGCCCAGGTGATGAGCTT 12058
Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262
|| || | ||| || ||||| || ||| |||| ||||| | |||||
Sbjct 12057 GGAATCTGTTGAAAGCA-GCGGTTGTCGGCG---GGCTAGGGCAAGGCCTTCCACAGGAA 12002
Query 83263 GGCGAAGAGCGGATGTGCCCTTGCA--CCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320
|||| | ||| | |||| ||| || || | | | ||||||| ||| ||| | |
Sbjct 12001 GGCGCAAAGCAG--GTGCATCTGCGTGCCATTCATCACACACTTCTGGAAAAGCGTGA-- 11946
Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380
|| || || | |||| |||||| || | |||| | |
Sbjct 11945 -TCATCTTTAAT-----------------GAGCTTGAGGGAATTCAGGCTCTCTTGGTAC 11904
Query 83381 TGGGCGTTTTCCTGGTGACCG-AACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCG 83439
| || ||| ||||| || | | |||||||| ||||| || ||||||||||| || |
Sbjct 11903 TTGGTGTTCTCCTGATGCCTGGAACTGGTTGTGTGGGAAGCCCAGCACTACCAGGCCTGG 11844
Query 83440 AGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCA 83499
|| || |||||||||||| ||||||||||||| | || | |||| | | || ||
Sbjct 11843 GGCAA--AGTTGCCGCTGCAGCTGGTTCATCTGAGTGCAGTCTCAGACCTTTGTGCCGCA 11786
Query 83500 GAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGG 83559
||| | || | ||||| ||||| | ||| ||| | | ||| | |||| ||||
Sbjct 11785 GAGCAATGCCGCTTTCTCAATGAGTAGCACCGTGCCAGGCTGGGTGCCCAGGCTCCCAGG 11726
Query 83560 TTCTCCTCCGG--TAATCGGGCGTGCTGAGAAGGCGTA 83595
|| ||| || ||| |||| | | ||||||| |||
Sbjct 11725 CTC-CCTGAGGGCTAA-CGGGTGCACAGAGAAGGTGTA 11690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608361487458120
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