Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq18093 134 1e-26 seq393 131 1e-25 seq1014 122 7e-23 seq3456 104 2e-17 seq2543 89.7 4e-13 seq17051 87.8 2e-12 seq561 87.8 2e-12 seq3805 84.2 2e-11 >seq18093 Length=33488 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||| |||| |||| || ||||| || || ||||| || || | Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | || |||||||||||||| ||| | || || ||||||||||| ||| Sbjct 2860 AGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2919 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| ||||| | ||| || |||| ||||||| Sbjct 2920 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2979 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| ||||||||||| || || || || || || || |||||||||| Sbjct 2980 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTTGA 3031 >seq393 Length=578971 Score = 131 bits (144), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || || || || || ||||| || || | | Sbjct 168884 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAAA 168941 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||||||||| ||| | || || ||||||||||| ||| | Sbjct 168942 GAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 169001 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 169002 TGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCT 169061 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || ||||| || |||||||||| Sbjct 169062 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGA 169112 >seq1014 Length=401283 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || || || |||||||| | | Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | |||||||||||||||||||| |||| || | ||||||||| || Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | | | || |||| |||||| Sbjct 41613 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 41672 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || || || || || || || ||||| Sbjct 41673 TCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq3456 Length=207676 Score = 104 bits (114), Expect = 2e-17 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||| | || || |||| || || | | Sbjct 50549 CCCCTC--AGACGGAGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAAA 50606 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || | | || |||||||||||||| ||| | ||||| ||||||||| | ||| | Sbjct 50607 GAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGGA 50666 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| || |||| | Sbjct 50667 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCT 50726 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 50727 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772 >seq2543 Length=251032 Score = 89.7 bits (98), Expect = 4e-13 Identities = 134/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| || || | | || | |||| Sbjct 121597 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTC 121656 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||||||||| ||| | || || |||||||||| | ||| | ||||||||| || Sbjct 121657 TTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGT-CGGGGGGATGCCTTCCTTATC 121715 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | || || |||| ||||||| |||| || ||||| Sbjct 121716 CTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGT 121775 Query 21143 CTTGCCGGT 21151 |||||| || Sbjct 121776 CTTGCCCGT 121784 >seq17051 Length=38469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | | Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| || ||||| ||| | || ||||| ||| |||| | || Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | ||||| ||| || Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||| || || | || || || || || ||||| ||| Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATTG 11243 >seq561 Length=508305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | |||| |||||||||||||||| ||||| | | Sbjct 125896 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 125837 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| || ||||| ||| | || ||||| |||||||| || Sbjct 125836 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 125777 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | ||||| | ||| || Sbjct 125776 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACC 125717 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||| || || | || || || || || ||||| ||| Sbjct 125716 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATTG 125666 >seq3805 Length=195799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||| |||| |||| || ||||| || || ||||| || || | Sbjct 71019 CCGCCTCTCAGACAGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 70960 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||| ||||||||| ||| | | || ||||||||||| ||| Sbjct 70959 AGAGTGCAGCCATCTTCCATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCAGGGGGG 70900 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| ||||| | || || |||| ||| ||| Sbjct 70899 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCG---GTGTCACTGGGTTCCACC 70843 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||| ||| | || || | || || ||||| Sbjct 70842 TCCGGGGTGATGGTCTTGCAGGTCAGGGTCTTCATGAAGATCTGCAT 70796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421964817116348