Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq18093 134 1e-26
seq393 131 1e-25
seq1014 122 7e-23
seq3456 104 2e-17
seq2543 89.7 4e-13
seq17051 87.8 2e-12
seq561 87.8 2e-12
seq3805 84.2 2e-11
>seq18093
Length=33488
Score = 134 bits (148), Expect = 1e-26
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | ||| |||| |||| || ||||| || || ||||| || || |
Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || ||| | || |||||||||||||| ||| | || || ||||||||||| |||
Sbjct 2860 AGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2919
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||| || || |||||| ||||| | ||| || |||| |||||||
Sbjct 2920 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2979
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|||| ||| ||||||||||| || || || || || || || ||||||||||
Sbjct 2980 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTTGA 3031
>seq393
Length=578971
Score = 131 bits (144), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| |||| |||| || || || || || ||||| || || | |
Sbjct 168884 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAAA 168941
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| || || | || |||||||||||||| ||| | || || ||||||||||| ||| |
Sbjct 168942 GAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 169001
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
||||||||| || |||||| ||||| | ||| || |||| ||||||| |
Sbjct 169002 TGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCT 169061
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
||| ||| |||||||||||||| | || || ||||| || ||||||||||
Sbjct 169062 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGA 169112
>seq1014
Length=401283
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | ||||||| |||| |||||||| || || || |||||||| | |
Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | |||||||||||||||||||| |||| || | ||||||||| ||
Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||| || ||| || | | | || |||| ||||||
Sbjct 41613 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 41672
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||||||||||| || || || || || || || |||||
Sbjct 41673 TCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719
>seq3456
Length=207676
Score = 104 bits (114), Expect = 2e-17
Identities = 159/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| |||| |||| || ||| | || || |||| || || | |
Sbjct 50549 CCCCTC--AGACGGAGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAAA 50606
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| || | | || |||||||||||||| ||| | ||||| ||||||||| | ||| |
Sbjct 50607 GAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGGA 50666
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
||||||||| || |||||| ||||| | ||| || |||| || |||| |
Sbjct 50667 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCT 50726
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||| ||| |||||||||||||| | || || || || || |||||
Sbjct 50727 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772
>seq2543
Length=251032
Score = 89.7 bits (98), Expect = 4e-13
Identities = 134/189 (71%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022
||| |||| |||| || ||||| || || ||||| || || | | || | ||||
Sbjct 121597 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTC 121656
Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082
|||||||||||||| ||| | || || |||||||||| | ||| | ||||||||| ||
Sbjct 121657 TTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGT-CGGGGGGATGCCTTCCTTATC 121715
Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142
|||||| ||||| | || || |||| ||||||| |||| || |||||
Sbjct 121716 CTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGT 121775
Query 21143 CTTGCCGGT 21151
|||||| ||
Sbjct 121776 CTTGCCCGT 121784
>seq17051
Length=38469
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | |
Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | | || ||||| || ||||| ||| | || ||||| ||| |||| | ||
Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| || || | | | ||||| ||| ||
Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | || |||||||| || || | || || || || || ||||| |||
Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATTG 11243
>seq561
Length=508305
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||| | ||| | |||| |||||||||||||||| ||||| | |
Sbjct 125896 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 125837
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | | || ||||| || ||||| ||| | || ||||| |||||||| ||
Sbjct 125836 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 125777
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| || || | | | ||||| | ||| ||
Sbjct 125776 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACC 125717
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | || |||||||| || || | || || || || || ||||| |||
Sbjct 125716 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATTG 125666
>seq3805
Length=195799
Score = 84.2 bits (92), Expect = 2e-11
Identities = 155/227 (68%), Gaps = 3/227 (1%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | ||| |||| |||| || ||||| || || ||||| || || |
Sbjct 71019 CCGCCTCTCAGACAGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 70960
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||| ||||||||| ||| | | || ||||||||||| |||
Sbjct 70959 AGAGTGCAGCCATCTTCCATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCAGGGGGG 70900
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||| || || |||||| ||||| | || || |||| ||| |||
Sbjct 70899 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCG---GTGTCACTGGGTTCCACC 70843
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||| ||| |||||||||| ||| | || || | || || |||||
Sbjct 70842 TCCGGGGTGATGGTCTTGCAGGTCAGGGTCTTCATGAAGATCTGCAT 70796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421964817116348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |