Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq18172 185 6e-42 >seq18172 Length=33122 Score = 185 bits (204), Expect = 6e-42 Identities = 508/774 (66%), Gaps = 13/774 (2%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| |||||| || | |||| ||| || ||| ||| | || ||| Sbjct 27589 TAAACAGCCATTTCCATTTTAATAGTCGGGTGAGGATTGTAGCCTTCAATCTGAAAGTCT 27530 Query 96958 TTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGC 97017 | || || || |||||||| ||| |||| | | || | ||||||||| Sbjct 27529 TCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGGAAAGGC 27470 Query 97018 CTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCA 97077 || || |||| |||||| | | || | ||||||||||||| |||||||| ||| Sbjct 27469 CTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATGTGTGCA 27410 Query 97078 TCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAA 97137 ||||| |||||||| | ||| || || || | ||| || |||||||| Sbjct 27409 TCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTGCGATCATG--- 27353 Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 || || | ||||| || ||| | || ||||| | || ||||| || |||| || Sbjct 27352 --TAGCAGGGCGTAGCTGGCGATGYTGAAGGGCACACYCAGGCCCATGTCTCCTGACCTC 27295 Query 97198 TGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGACA 97256 || || | ||| ||||| |||| || | ||| ||| || ||||| | | | || || Sbjct 27294 TGGTACAGCTGGCAGGACAGCTCACCGTTCAC-CACGTAGAACTGGCAAAGGGCGTGGCA 27236 Query 97257 GGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCT 97316 ||||| | ||||| || | |||| |||||||||||||| | |||||||| Sbjct 27235 CGGGGGTAGGGCCATGAGAGGGAGATCTTTCGGATTCCAAGCACACAGGATGATTCTTCT 27176 Query 97317 ATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCC 97376 ||| ||||| || | || || | | | | | | | |||||| || |||| | Sbjct 27175 GTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATC 27116 Query 97377 ACCATAAT-TG--TGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCC 97433 ||||| || ||| || ||| ||||| | |||||||||||||| || || || Sbjct 27115 TGAATAATCTGAATGCATAT---CTTTGTATTCGGTCCCAAAATGCCTCCACTGAAAGCC 27059 Query 97434 ATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGA 97493 |||||| || || | || |||||| |||| |||| || || | || || || Sbjct 27058 ATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTC 26999 Query 97494 CCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGT 97553 | || ||||| |||||||| || | ||| || | | ||||| || || || Sbjct 26998 TCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGT 26939 Query 97554 AGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGT 97613 ||||| |||||||||||| ||| || ||| |||||| | || || || | || || Sbjct 26938 GGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACATTTGGT 26879 Query 97614 TGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 ||| | |||||||| || | | | |||||| | | |||||| || || || Sbjct 26878 TGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACAC 26825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346542235524710