Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1014 127 2e-24 seq393 111 1e-19 seq18093 98.7 9e-16 seq17051 95.1 1e-14 seq3456 93.3 4e-14 seq2543 91.5 1e-13 seq10582 87.8 2e-12 seq561 87.8 2e-12 >seq1014 Length=401283 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || || || || || |||||| |||||| Sbjct 41510 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTC 41569 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || ||| | || ||||||||||| || || || ||||||||||||||| Sbjct 41570 CAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 41629 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||||||||| | || | || || Sbjct 41630 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGAGTGATGGTCTT 41689 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || |||||||| Sbjct 41690 GCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq393 Length=578971 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || || ||||| || ||||||||||| | |||||| ||| || Sbjct 168899 ACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 168958 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 168959 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGG 169018 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 169019 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 169078 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| |||||||| Sbjct 169079 CCGGTCAGGGTCTTCACAAAGATCTGCAT 169107 >seq18093 Length=33488 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||||||||| || ||||||||||| | |||| | ||| || Sbjct 2818 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCC 2877 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||| | |||||| || || || ||||| || || || Sbjct 2878 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 2937 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 2938 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2997 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 2998 CCAGTCAAGGTCTTCACGAAGATCTGCAT 3026 >seq17051 Length=38469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | ||||||||| | || | || ||||| |||||||||||||| || | Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || || || || ||||| |||| || | ||| | ||| |||| Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| || || || || | ||| | || |||| | |||||| Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | || || || ||||| || || || ||||||||||| Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247 >seq3456 Length=207676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||| ||| |||| || |||| |||||| | ||||| ||| || Sbjct 50564 ACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCTTCC 50623 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| || | |||||| | || || ||||| ||||| || Sbjct 50624 AGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCCTGG 50683 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 50684 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTG 50743 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 50744 CCGGTCAGGGTCTTCACGAAGATCTGCAT 50772 >seq2543 Length=251032 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||||||||| || ||||||||||| ||||||| || || Sbjct 121601 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 121660 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||| | |||||| ||||| || ||||| ||||| || Sbjct 121661 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG-GGGATGCCTTCCTTATCCTGG 121719 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | | || |||||| || ||| ||||| | || | || ||| Sbjct 121720 ATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTG 121779 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGC 118736 || ||||| || || | || |||||| Sbjct 121780 CCCGTCAGGGTCTTCCCGAAGATCTGC 121806 >seq10582 Length=81843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | || |||| |||||||||||||| || || ||| | Sbjct 38527 TCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCC 38586 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || || || || ||||| |||| || | ||||| || ||||| || || ||||| Sbjct 38587 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 38646 Query 118643 GT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 || ||| | || ||| || | ||| | || |||| | |||||||||| || | Sbjct 38647 GTCCTGGACCTTGGCCTTT-ACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGA 38705 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || || ||||||||||| Sbjct 38706 TGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742 >seq561 Length=508305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || |||| |||||||||||||| || Sbjct 125897 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGA 125838 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | ||||| || ||||| Sbjct 125837 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 125778 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || |||||||| || || || || | ||| | || || | ||||| Sbjct 125777 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGAC 125718 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || ||||| || || || ||||||||||| Sbjct 125717 CTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433527950120476