Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1014 127 2e-24
seq393 111 1e-19
seq18093 98.7 9e-16
seq17051 95.1 1e-14
seq3456 93.3 4e-14
seq2543 91.5 1e-13
seq10582 87.8 2e-12
seq561 87.8 2e-12
>seq1014
Length=401283
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || || || || || || |||||| ||||||
Sbjct 41510 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTC 41569
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || ||| | || ||||||||||| || || || |||||||||||||||
Sbjct 41570 CAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 41629
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | || | |||||| || ||||||||| | || | || ||
Sbjct 41630 GATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGAGTGATGGTCTT 41689
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || || || || ||||||||
Sbjct 41690 GCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719
>seq393
Length=578971
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || || ||||| || ||||||||||| | |||||| ||| ||
Sbjct 168899 ACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 168958
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|||||||| || || ||||||| | |||||| || || || ||||| ||||| ||
Sbjct 168959 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGG 169018
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 169019 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 169078
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || ||||| ||||||||
Sbjct 169079 CCGGTCAGGGTCTTCACAAAGATCTGCAT 169107
>seq18093
Length=33488
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | ||||||||||| || ||||||||||| | |||| | ||| ||
Sbjct 2818 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCC 2877
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|||||||| || || ||||||| | |||||| || || || ||||| || || ||
Sbjct 2878 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 2937
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 2938 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2997
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || || || ||||||||
Sbjct 2998 CCAGTCAAGGTCTTCACGAAGATCTGCAT 3026
>seq17051
Length=38469
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| || || | ||||||||| | || | || ||||| |||||||||||||| || |
Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| || ||| || || || || ||||| |||| || | ||| | ||| ||||
Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| || |||||||| || || || || | ||| | || |||| | ||||||
Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| || | || || || ||||| || || || |||||||||||
Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247
>seq3456
Length=207676
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | ||| ||| |||| || |||| |||||| | ||||| ||| ||
Sbjct 50564 ACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCTTCC 50623
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|||||||| || || |||| || | |||||| | || || ||||| ||||| ||
Sbjct 50624 AGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCCTGG 50683
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| || ||| ||||| | ||| | || |||
Sbjct 50684 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTG 50743
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| || || || || ||||||||
Sbjct 50744 CCGGTCAGGGTCTTCACGAAGATCTGCAT 50772
>seq2543
Length=251032
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/207 (70%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | ||||||||||| || ||||||||||| ||||||| || ||
Sbjct 121601 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 121660
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|||||||| || || ||||||| | |||||| ||||| || ||||| ||||| ||
Sbjct 121661 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG-GGGATGCCTTCCTTATCCTGG 121719
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | | || |||||| || ||| ||||| | || | || |||
Sbjct 121720 ATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTG 121779
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGC 118736
|| ||||| || || | || ||||||
Sbjct 121780 CCCGTCAGGGTCTTCCCGAAGATCTGC 121806
>seq10582
Length=81843
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582
||||||||| | || | || |||| |||||||||||||| || || ||| |
Sbjct 38527 TCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCC 38586
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
||| || || || || ||||| |||| || | ||||| || ||||| || || |||||
Sbjct 38587 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 38646
Query 118643 GT-CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701
|| ||| | || ||| || | ||| | || |||| | |||||||||| || |
Sbjct 38647 GTCCTGGACCTTGGCCTTT-ACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGA 38705
Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||| || || || |||||||||||
Sbjct 38706 TGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742
>seq561
Length=508305
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| || || | ||||||||| | || | || |||| |||||||||||||| ||
Sbjct 125897 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGA 125838
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||| || ||| || || || || ||||| |||| || | ||||| || |||||
Sbjct 125837 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 125778
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || |||||||| || || || || | ||| | || || | |||||
Sbjct 125777 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGAC 125718
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || | || || || ||||| || || || |||||||||||
Sbjct 125717 CTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433527950120476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |