Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1525 246 3e-60 seq36034 187 2e-42 seq25410 107 2e-18 seq549 107 2e-18 seq1670 102 8e-17 >seq1525 Length=329219 Score = 246 bits (272), Expect = 3e-60 Identities = 503/743 (68%), Gaps = 12/743 (2%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||| ||| ||| | ||||| || | |||||||| |||||||| || || || ||| Sbjct 305181 GACAKCACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 305122 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 || | ||||||||| |||||||| ||||| ||||||| | || | || | Sbjct 305121 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAA 305062 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 |||| |||| || | ||| || |||| |||| || ||||| ||||| ||| |||| Sbjct 305061 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAA 305002 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || || | || || | || || || | | | ||||| |||| Sbjct 305001 TTCATCCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACT 304942 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGTTTA 16225 || | |||||| ||| | ||| || | || ||| || || | |||||| Sbjct 304941 GCACTGACGATTATTTCTTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 304885 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||| | || ||||| ||||| || || || ||||| || || || | || || ||| Sbjct 304884 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 304825 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 ||||| || || ||||| ||||||||||| || | ||| ||||| | ||||| |||||| Sbjct 304824 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 304765 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAt 16403 |||||||| || ||||| ||||||||||| || | | || || || ||||| || | Sbjct 304764 GAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCT 304705 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 | | | || ||||| ||||||| ||| || | || ||||| ||| ||| Sbjct 304704 GTGTCC--TCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCT 304647 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | || || || || | | | | |||||||| |||| || ||||| || | || | Sbjct 304646 CAATGGCGTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGA 304587 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTA 16582 |||||||||||| ||||| || || ||||| || || || || ||||| ||| || | Sbjct 304586 GACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCA-CGG 304528 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 ||||| | || || |||| | || || || | | |||||| || |||| ||| Sbjct 304527 GCTTCCGTCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCA 304468 Query 16643 TCGCTAGCTGCAAAAAACGCAAG 16665 || || |||||| | || || || Sbjct 304467 TCACTTGCTGCAGAGAAAGCCAG 304445 >seq36034 Length=1448 Score = 187 bits (206), Expect = 2e-42 Identities = 330/476 (69%), Gaps = 15/476 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||| ||| ||| | ||||| || | |||||||| ||| |||| || || || ||| Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC-- 16046 || | ||||||||| ||||||| ||||| ||||||| | || | | | | || Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGCTA 449 Query 16047 -ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | |||| |||| || | ||| || ||||||||||| || ||||| ||||| ||| Sbjct 448 AAACCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTG 389 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || ||||| || || | || || || | || || || | || | | |||||| || Sbjct 388 CAATTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTA 329 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT---TAATAAGTGT 16222 || || | | |||||| ||| | ||| || | || ||| || || | |||| Sbjct 328 ACTGCATTGACGATTATTTCTTTGACT---CTCTGCTCCGAAGGTTTGTGTAGCAGGTGT 272 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 || ||||| | || ||||| ||||| || || || ||||| || || || | || || Sbjct 271 TTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTG 212 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 |||||||| || | ||||| || ||||||||||| | ||| ||||| | ||||| ||| Sbjct 211 GAAAATGTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAA 152 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT 16398 ||||||||| || ||||| ||||| |||| || | | || || || ||||| Sbjct 151 CCAGAAAAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGT 99 >seq25410 Length=10104 Score = 107 bits (118), Expect = 2e-18 Identities = 197/286 (69%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGC 16584 |||||||||||| ||||| || || ||||| || || || || ||||| || || || Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041 Query 16585 TTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 ||| | || || ||||| | ||||| || | ||| |||| || ||||| ||||| Sbjct 10040 TTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATC 9981 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGAAAGTT 16703 || |||||||| || || || | || ||| |||| | | || | | || | | Sbjct 9980 ACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 9921 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 || ||||| || || || || | || |||||||| | |||||||| ||||| Sbjct 9920 TT-CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862 Query 16764 CAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 |||| || |||||||| | ||| || || | ||| | |||||||| Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 9816 >seq549 Length=511996 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 ||||| || || || | || || |||||||| || || ||||| || ||||||||||| Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||||||||| || Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 260576 Query 16379 AC 16380 || Sbjct 260577 AC 260578 >seq1670 Length=315515 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | | |||||||| | Sbjct 184313 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 184372 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 184373 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 184432 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 184433 CCATAAAATCAAAGGGATTTTCTG 184456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462181286575800