Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq16711 2019 0.0 >seq16711 Length=40113 Score = 2019 bits (2238), Expect = 0.0 Identities = 1483/1730 (86%), Gaps = 49/1730 (3%) Strand=Plus/Minus Query 107068 CCAG-TCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGT 107126 |||| |||| | ||| ||||||| || |||||||||| || |||||||| ||| | Sbjct 5793 CCAGATCCTGATCCCAACCCCAGCACGATCAGCTGGTTTGTAGTGTCAGGTTATAGACCT 5734 Query 107127 CCATCCACAAG-------------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTA 107173 ||||| || | || ||||||||||||||||||||||||||||||| Sbjct 5733 CCATCAGTGAGCTGGGTGTGTGAAGTTCCTAGGCAGGACTTGACTGAGGATATTTGTCTA 5674 Query 107174 TAGAAGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTC--TG-------- 107223 |||||| | |||| ||| |||||||| ||||||||||||||||| | || Sbjct 5673 GAGAAGAAACCTATTTTTGCCATCACTTCGGAGTTGAACTTGATGTACCTTGAGCACGTT 5614 Query 107224 ---GATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC---CTCCTCCACC 107277 | ||||||||||| | ||||||||||||||||||||||||| || ||||||| || Sbjct 5613 CCAGGTTAGTTTGTAACTGAAGGCATTTTGTTCTGTCCAAGGATTTCATCCTCCTCCTCC 5554 Query 107278 TTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGA 107337 || |||||||||||||||| | | |||||||| ||||||||||| | ||||| ||||| Sbjct 5553 TTCCCTGTGCCCAAACTCTACCGGTCTCCCATTCCATGAAGATGATTAAGTGGAGGAAGA 5494 Query 107338 AGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTT 107397 | || ||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 5493 AACTCTGCGGGGGGCATCACCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTG 5434 Query 107398 CTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGG 107457 |||||| |||||| |||||||| |||||||| |||||||| ||||| |||| ||||||| Sbjct 5433 CTCTGAAACTTTCTCTCAGGTTAAAATGTGACATAGATTCCCTGGATGTGGAATCCAGGG 5374 Query 107458 ACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGA 107517 |||||| || ||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 5373 ACTTCCGAAGCCAGCACTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGA 5314 Query 107518 GATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCC 107577 ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| Sbjct 5313 GATCCATCAACTGTTCTGGGATCACCCGAGGGGACCAGGAAGCAGTGGTCAAGGCTCTCC 5254 Query 107578 TAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACA 107637 | ||||| |||||||| ||||| |||||| |||| |||| | |||| |||||||||||| Sbjct 5253 TGGACAATCTGGAAGTCAAGAAGAAGCGGGAGCCTTTCACAGACACCGATTACCTCAACA 5194 Query 107638 TAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 | |||||||||||||||| || || |||| ||||||||||| |||||||||||||| | Sbjct 5193 TGACCAGAGACTGTGAGCAGTTTAAATCCCAGAGGAAGTTCATCCAGTTCCCACTGAGCA 5134 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 5133 GAGAAGAGTTAGACTTCCCCATCGCCTACTCTGTGGTGGTCCATGAGAAGATTGAAAACT 5074 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 | ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| Sbjct 5073 TCGAACGGCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGCGTCCATGTGGATG 5014 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 |||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 5013 AGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATCATTTCCTGCTTCCCAAATG 4954 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||| Sbjct 4953 TCTTCATGGCCAGTAAGTTGGTCCGGGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTG 4894 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 4893 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCGGTGCCATGGAAATACTTACTGAATA 4834 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | || |||||||| || || |||||||||||||| ||||||||||||||||||||||||| Sbjct 4833 CGTGTGGGACAGATTTTCCTATAAAGACCAATGCTGAGATGGTCCTGGCCCTCAAGATGT 4774 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 |||| || ||||||||||||||||| ||| ||||| |||||| |||||| |||||||| Sbjct 4773 TGAATGGGAAGAACAGTATGGAGTCCGAGATACCTACTGAGTACAAAAAGTCTCGCTGGA 4714 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177 |||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 4713 AATACCACTATGAGGTGACAGACACATTGCACCTAACCAGCAAGATGAAGGACCCTCCCC 4654 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4653 CTGATAACTTACCTGTGTTCACAGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCC 4594 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 ||||||||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||| Sbjct 4593 AACATGTCTTAGAGAACCCCAAATCCCAAAGACTGATCGAATGGGCAAAAGACACCTATA 4534 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTC 108357 |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 4533 GCCCGGATGAACACCTCTGGGCCACCCTTCAGCGTGCACCGTGGATGCCTGGCTCTGTCC 4474 Query 108358 CTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGC 108417 | ||||||||||| |||||||||||||||||| ||||| |||||||| ||||| |||| Sbjct 4473 CCTACCACCCCAAGTTTCACATCTCAGACATGACCGCCATTGCCAGGCTGGTCAAATGGC 4414 Query 108418 AGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATC 108477 || ||| |||||||| |||| |||||||| || |||||||| |||||||||||||| | Sbjct 4413 AGCTCCATGAGGGAGACATCAGTATGGGGGCACCCTATGCACCTTGCTCTGGAATCCACC 4354 Query 108478 GGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACC 108537 | |||| ||||||||||| ||||| ||||||||| |||||||||| ||||| ||||||| Sbjct 4353 AGCGGGCTATCTGCATTTATGGGGCTGGGGACCTGCACTGGATTCTTCAGAATCATCACC 4294 Query 108538 TCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGT 108597 ||||||| |||||||||||||| | |||||| ||||| || ||||||||||||||||||| Sbjct 4293 TCTTGGCGAACAAGTTTGACCCAAAGGTGGACGATAATGTTCTGCAGTGCTTAGAAGAGT 4234 Query 108598 ACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTGT------------ 108645 | ||||| ||||||||||||||||||||||||| |||| | ||| || Sbjct 4233 ATTTACGTTATAAGGCCATCTATGGGACTGAACTCTGAGATACACCGTGAGAGGATTGCA 4174 Query 108646 ------GGGCCAGGGAC-TGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGG 108698 ||| |||| || ||| | ||| |||| || | |||| || ||||||||||| Sbjct 4173 ACCCGAGGGGCAGGAACATGTACAAACGTGCCTAGAACACGCTGGGACAGTGTGGGGTGG 4114 Query 108699 GGGACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 | ||| |||||| |||||||||||||||||||| ||||||| |||||||| Sbjct 4113 GAGACCAGGGCTCTGGAATCCATGGCATCCCCCTGGGTCAGGGGGCTGCT 4064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348026000379222