Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 246 2e-60
seq15026 167 2e-36
>seq18172
Length=33122
Score = 246 bits (272), Expect = 2e-60
Identities = 532/797 (67%), Gaps = 5/797 (1%)
Strand=Plus/Plus
Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037
|| || || || || || || | || || || || ||||| | || || | | |||||
Sbjct 26798 GACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAGA 26857
Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097
|||||||||| | | || || ||| | || || || || || ||| || |||||
Sbjct 26858 GATGAATTTCCTCTGCTGACAACCAAATGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTG 26917
Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157
| |||||||| || ||||| ||||| ||| ||||| || ||||| || ||
Sbjct 26918 CTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATC 26977
Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217
||| || |||| || | || || ||||| ||||| || | | |||
Sbjct 26978 TGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAA 27037
Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277
|||||||| || || || ||||| ||||| ||||| |||||||| | ||||| ||
Sbjct 27038 GGGGATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGACCGAATACAAAGAT 27097
Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337
||| | || |||||| | ||||||||||||||| | ||||| || | | | |||
Sbjct 27098 ATGCATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATC 27157
Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397
||||| ||||| ||||||||||||| || | || || ||||| | |||||| | |||
Sbjct 27158 AAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCGAAAGATCTCCCT 27217
Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457
| ||||| | || || || || || ||||| || ||||| | || ||| ||
Sbjct 27218 CTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTG 27277
Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517
|| || || |||| || | || | || ||||| ||| |||| || |||| || ||
Sbjct 27278 TCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGRGTGTGCCCTTCARCATCGCC 27337
Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577
|| || || |||| || ||||| ||||| || | || | ||||||||
Sbjct 27338 AGCTACGCCCTGC-----TACATGATCGCACACACCACGCGCCTGAAGCCAGGTGACTTT 27392
Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637
|| ||||| | ||||| || || |||||||| ||||| || || || | ||| | |||
Sbjct 27393 GTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCGCTGAAAATTCAG 27452
Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697
| ||| |||||| | ||||| | || | || ||||| ||| | | |||
Sbjct 27453 CTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAAGTTGAGAAAATT 27512
Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCA 20757
| || || || ||||| || ||| | | ||||| || ||||| || | ||| |
Sbjct 27513 GATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAA 27572
Query 20758 ATGGAAATGTCTGTTTA 20774
||||||||| |||||||
Sbjct 27573 ATGGAAATGGCTGTTTA 27589
>seq15026
Length=49095
Score = 167 bits (184), Expect = 2e-36
Identities = 381/570 (67%), Gaps = 10/570 (2%)
Strand=Plus/Minus
Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272
|||| |||||||| || || || ||| | ||||| ||||| | ||| | ||||||||
Sbjct 47071 AAGAAGGGGATTTAGGCCCAGTTTATAGCTTTCAGTGGAGGCCTTTGGTGGCTGAATACA 47012
Query 20273 TTGACATGAACACAAAT-TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331
|| || | |||| |||| | ||||||||||| ||| | ||||| || ||| |
Sbjct 47011 AAGATGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGAC 46952
Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391
||| ||||| ||||| | ||||||||||| ||| |||| || ||||| | ||||||
Sbjct 46951 ACAATCAAAACCAACCCTGAAGACAGAAGAATCATTCTATGTGCTTGGAA-TCAAAAGAT 46893
Query 20392 GTGCCTTTAATGGCTT-------TGCCTCCATGTCATATGCTATGCCAATTTTACGTTGC 20444
| ||| | || | | |||| | || ||| | ||||| || ||||| |
Sbjct 46892 CTTCCTCTCATACCCTGCCACCCTGCCCCTGTGCCATGCCTTTTGCCACTTCTACGTGGT 46833
Query 20445 TAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCC 20504
|| |||| |||| || || |||| || | || | || | ||| |||||||| |
Sbjct 46832 GAACCATGAGCTGTCCTG-CAGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTC 46774
Query 20505 TTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564
||||| | || || ||||| ||||| || || ||||| ||||| | |||| | ||
Sbjct 46773 CTTCAACGTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAA 46714
Query 20565 AACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624
| ||||||| || ||||| | ||||| || || |||||||| |||| || || |
Sbjct 46713 GCCAGGTGACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGAGCT 46654
Query 20625 TTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAAC 20684
| ||| | ||| | || || ||| | |||| || || || | |||
Sbjct 46653 GCTGAAAATGCAGCTTCAGGGAGAATCAAGGCCTTTCCTAAAGCTCAAAATCCTTGGAAA 46594
Query 20685 TGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744
||| | | || | || || |||||||| || ||| | | ||||| || | ||||||
Sbjct 46593 AGTTGAGAAAATCGATGACTTCAAAGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCA 46534
Query 20745 TAATTCAATTCCAATGGAAATGTCTGTTTA 20774
| | ||| |||||||||| |||||||
Sbjct 46533 TCCCACTATTAAAATGGAAATGGCTGTTTA 46504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398905704258835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |