Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq18172 246 2e-60 seq15026 167 2e-36 >seq18172 Length=33122 Score = 246 bits (272), Expect = 2e-60 Identities = 532/797 (67%), Gaps = 5/797 (1%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || || || || || || | || || || || ||||| | || || | | ||||| Sbjct 26798 GACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGCCTGAGA 26857 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||| | || || || || || ||| || ||||| Sbjct 26858 GATGAATTTCCTCTGCTGACAACCAAATGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTG 26917 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| ||||| ||| ||||| || ||||| || || Sbjct 26918 CTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATC 26977 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| || |||| || | || || ||||| ||||| || | | ||| Sbjct 26978 TGGGATGCCAATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAA 27037 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 |||||||| || || || ||||| ||||| ||||| |||||||| | ||||| || Sbjct 27038 GGGGATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGACCGAATACAAAGAT 27097 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | || |||||| | ||||||||||||||| | ||||| || | | | ||| Sbjct 27098 ATGCATTCAGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATC 27157 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||||| ||||||||||||| || | || || ||||| | |||||| | ||| Sbjct 27158 AAAACCAACCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCGAAAGATCTCCCT 27217 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 | ||||| | || || || || || ||||| || ||||| | || ||| || Sbjct 27218 CTCATGGCCCTACCCCCGTGCCACGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTG 27277 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || |||| || | || | || ||||| ||| |||| || |||| || || Sbjct 27278 TCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGRGTGTGCCCTTCARCATCGCC 27337 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || || || |||| || ||||| ||||| || | || | |||||||| Sbjct 27338 AGCTACGCCCTGC-----TACATGATCGCACACACCACGCGCCTGAAGCCAGGTGACTTT 27392 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || ||||| | ||||| || || |||||||| ||||| || || || | ||| | ||| Sbjct 27393 GTACACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCGCTGAAAATTCAG 27452 Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697 | ||| |||||| | ||||| | || | || ||||| ||| | | ||| Sbjct 27453 CTTCAGCGAGAACCAAGGCCTTTCCCCAAGCTCAGAATCCTTCGAAAAGTTGAGAAAATT 27512 Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCA 20757 | || || || ||||| || ||| | | ||||| || ||||| || | ||| | Sbjct 27513 GATGACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAA 27572 Query 20758 ATGGAAATGTCTGTTTA 20774 ||||||||| ||||||| Sbjct 27573 ATGGAAATGGCTGTTTA 27589 >seq15026 Length=49095 Score = 167 bits (184), Expect = 2e-36 Identities = 381/570 (67%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| |||||||| || || || ||| | ||||| ||||| | ||| | |||||||| Sbjct 47071 AAGAAGGGGATTTAGGCCCAGTTTATAGCTTTCAGTGGAGGCCTTTGGTGGCTGAATACA 47012 Query 20273 TTGACATGAACACAAAT-TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331 || || | |||| |||| | ||||||||||| ||| | ||||| || ||| | Sbjct 47011 AAGATGTGGATTTAAATGTATTCACGTCAAGGAGTAGACCAACTGCAAAAGGTGATTGAC 46952 Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391 ||| ||||| ||||| | ||||||||||| ||| |||| || ||||| | |||||| Sbjct 46951 ACAATCAAAACCAACCCTGAAGACAGAAGAATCATTCTATGTGCTTGGAA-TCAAAAGAT 46893 Query 20392 GTGCCTTTAATGGCTT-------TGCCTCCATGTCATATGCTATGCCAATTTTACGTTGC 20444 | ||| | || | | |||| | || ||| | ||||| || ||||| | Sbjct 46892 CTTCCTCTCATACCCTGCCACCCTGCCCCTGTGCCATGCCTTTTGCCACTTCTACGTGGT 46833 Query 20445 TAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCC 20504 || |||| |||| || || |||| || | || | || | ||| |||||||| | Sbjct 46832 GAACCATGAGCTGTCCTG-CAGCTGTACCAGAGGTCAGGAGACAGGGGCCTGGGTGTGTC 46774 Query 20505 TTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 ||||| | || || ||||| ||||| || || ||||| ||||| | |||| | || Sbjct 46773 CTTCAACGTCGCCAGCTATGCCCTGCTCACCTACATGATCGCACACATCACAGGCCTGAA 46714 Query 20565 AACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACC 20624 | ||||||| || ||||| | ||||| || || |||||||| |||| || || | Sbjct 46713 GCCAGGTGACTCTGTACACACTTTGGGAGATGCACACATTTACCTGGATCACATTGAGCT 46654 Query 20625 TTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAAC 20684 | ||| | ||| | || || ||| | |||| || || || | ||| Sbjct 46653 GCTGAAAATGCAGCTTCAGGGAGAATCAAGGCCTTTCCTAAAGCTCAAAATCCTTGGAAA 46594 Query 20685 TGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744 ||| | | || | || || |||||||| || ||| | | ||||| || | |||||| Sbjct 46593 AGTTGAGAAAATCGATGACTTCAAAGCTGAAGACTTTCAGATTGAAGGCTACAGTCCCCA 46534 Query 20745 TAATTCAATTCCAATGGAAATGTCTGTTTA 20774 | | ||| |||||||||| ||||||| Sbjct 46533 TCCCACTATTAAAATGGAAATGGCTGTTTA 46504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398905704258835