Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1014 109 4e-19
seq393 104 2e-17
seq18093 95.1 1e-14
seq3456 82.4 6e-11
seq2543 82.4 6e-11
>seq1014
Length=401283
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| || | | ||||||||||| ||| ||| ||||| || || |||||
Sbjct 41492 GCCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGA 41551
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
||| ||| | || ||||| ||||| || ||||| |||| ||||| ||||| || ||
Sbjct 41552 CAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGG 41611
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| ||||||||||| ||||| || || | | | | |||| | ||| ||
Sbjct 41612 GATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 41671
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | || || ||||||||||||| |||||||| ||||| |||||
Sbjct 41672 CTCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719
>seq393
Length=578971
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| |||||| || || ||||| |||||||| ||
Sbjct 168880 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGA 168939
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| ||||| || || || || | || ||| ||||| || ||
Sbjct 168940 AAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 168999
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| || ||||| ||| || || ||| || | | | | |||| | ||||||
Sbjct 169000 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCAC 169059
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| ||| || |||||||| ||||| |||||||||||||| ||||| |||
Sbjct 169060 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTTG 169111
>seq18093
Length=33488
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||||||||||| | | |||| |||||| || ||| ||||| |||||||| ||
Sbjct 2799 GCCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 2858
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| | | | || ||||| ||||| || || || || | || ||| ||||| || ||
Sbjct 2859 AAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 2918
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| || || || ||| || || ||| || | | | | |||| | ||||||
Sbjct 2919 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 2978
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| ||| || |||||||| |||| |||||||| ||||| ||||| |||
Sbjct 2979 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTTG 3030
>seq3456
Length=207676
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| |||||| || | | ||||| |||| ||| ||
Sbjct 50545 GCCACCCCTCAGACGGAGGACCAGGTGCAGTGTTGACCCTTTCTGGATGTCGTAATCAGA 50604
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| || | || ||||| ||||| || || || || | || ||| ||| | || ||
Sbjct 50605 AAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGACAGGGGG 50664
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| || ||||| ||| || || ||| || | | | | |||| | ||||||
Sbjct 50665 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGACTCCAC 50724
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| ||| || |||||||| ||||| |||||||| ||||| |||||
Sbjct 50725 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 50772
>seq2543
Length=251032
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/207 (69%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| || ||| ||||| |||||||| || | || |||| |||
Sbjct 121601 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 121660
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || || | || ||| |||||||| || | || ||||| |||
Sbjct 121661 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG-ATGCCTTCCTTATCCTGG 121719
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||||| || || ||||||
Sbjct 121720 ATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTG 121779
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGC 45334
|||||||| |||||| | ||||| |||
Sbjct 121780 CCCGTCAGGGTCTTCCCGAAGATCTGC 121806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394799768756263
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |