Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 228 8e-55
seq36034 158 1e-33
seq25410 131 2e-25
seq549 114 1e-20
seq41499 98.7 1e-15
seq7076 82.4 7e-11
>seq1525
Length=329219
Score = 228 bits (252), Expect = 8e-55
Identities = 495/734 (67%), Gaps = 8/734 (1%)
Strand=Plus/Minus
Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963
|| ||||| | ||||| || | ||||| || |||||||||||||| || |||||||||
Sbjct 305175 ACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 305116
Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGA-CATAAACACTTTATCACAACCTAG 14022
|| ||||| |||||||| |||||||||||| | || ||| ||| | | |||| ||
Sbjct 305115 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAA-AACCCAG 305057
Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082
|| | | | ||| || || | ||| | || || || ||| ||| ||||||||||
Sbjct 305056 CTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCAT 304997
Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC-CT 14141
|| || || || || | | || | || | ||||| || || ||
Sbjct 304996 CCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCACT 304937
Query 14142 --CGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 14199
|| |||| | | | | | | | ||||| | | || ||||| || ||
Sbjct 304936 GACGATTATT-TCTTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACAT 304880
Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259
| || ||||| ||||| || | ||||| ||||| ||||||||||| || ||||||||
Sbjct 304879 CAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGT 304820
Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319
| || ||||||| ||||||||| || | ||| ||||| | || || || || |||||
Sbjct 304819 GAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAA 304760
Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379
||| || || || ||||| ||||| ||||| | ||||||||| ||| || | | |||
Sbjct 304759 GAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTC 304700
Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439
| ||||| ||||| || | || || || | | || |||||| ||||| ||
Sbjct 304699 CTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGC 304640
Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499
|| || | | |||| | ||||| | | | || ||| || ||| | || | |||||
Sbjct 304639 GTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATA 304580
Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559
|||||| || |||||||||||||| || || || || ||||| ||| | ||||| |
Sbjct 304579 CATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGT 304520
Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619
| || | ||| | || | || ||| |||||||| |||| |||||||| ||
Sbjct 304519 CATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGC 304460
Query 14620 TGCAAAAAATGCCA 14633
|||| | || ||||
Sbjct 304459 TGCAGAGAAAGCCA 304446
>seq36034
Length=1448
Score = 158 bits (174), Expect = 1e-33
Identities = 375/566 (66%), Gaps = 3/566 (1%)
Strand=Plus/Minus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || | ||| | ||||| || | ||||| || ||| |||||||||| || |||
Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017
|||||||| ||||| ||||||| |||||||||||| | | || || || | ||
Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446
Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077
|| || || | | | ||| || || | || || || || || ||| ||| |||
Sbjct 445 CCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAA 386
Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137
||||| || || || || || || | | || | || || | |||||| ||
Sbjct 385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 326
Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197
|| | | || || | | | | | ||||| | | || ||||| ||
Sbjct 325 GCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 266
Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257
|| | || ||||| ||||| || | ||||| ||||| ||||||||||| || ||||||
Sbjct 265 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 206
Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317
|| | | ||||||| ||||||||||| | ||| ||||| | || || || || |||
Sbjct 205 GTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 146
Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377
||| ||||| || |||||| |||| ||| | ||||||||| ||| || | ||||
Sbjct 145 AAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTG 89
Query 14378 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437
| | ||||| ||||| || | || || || | | || |||||| ||||||
Sbjct 88 TCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATA 29
Query 14438 GCATTAAATAAATGTTCCTTCTCTTT 14463
|| || || | | |||| | |||||
Sbjct 28 GCGTTGAAGAGAAATTCCCTTTCTTT 3
>seq25410
Length=10104
Score = 131 bits (144), Expect = 2e-25
Identities = 228/327 (70%), Gaps = 6/327 (2%)
Strand=Plus/Minus
Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554
|||||||||||||| || ||||||||||| || || || || ||||| ||||| |||
Sbjct 10099 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGCT 10040
Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614
|| | || || ||| | ||| | || |||| ||||||| ||||| ||||||
Sbjct 10039 TCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATCA 9980
Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674
|| |||||||| || |||| | | ||| || ||| ||| ||| | || |
Sbjct 9979 CTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 9920
Query 14675 TTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAA 14732
| ||| | ||| || ||||| ||||| || || || ||| |||||||||| |||
Sbjct 9919 TCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862
Query 14733 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14792
||||||| |||||||| ||| || || | ||| |||||||| | ||||| | |
Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA-GTGG 9803
Query 14793 AAGATG-TTTCTTTAAGAATTGGTTCC 14818
| || ||||||| |||| |||||||
Sbjct 9802 CGGGTGTTTTCTTTCAGAAGTGGTTCC 9776
>seq549
Length=511996
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||
Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| |
Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||||||
Sbjct 260575 CTACGACACGTTCTCC 260590
>seq41499
Length=968
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || |||
Sbjct 919 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 860
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017
|||||||| ||||| |||||||| |||||||||||| | | || || || | ||
Sbjct 859 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 800
Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077
|| || || | | | ||| || || | || || || || || ||| ||| |||
Sbjct 799 CCCAGCTCCAGCATAAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCAA 740
Query 14078 TTCATACCTATTAGTTTTACAGG 14100
||||| || || || || || ||
Sbjct 739 TTCATCCCAATGAGCTTCACTGG 717
>seq7076
Length=122421
Score = 82.4 bits (90), Expect = 7e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700
|||||||| || |||||| | |||| ||| || || |||| |||| | || |
Sbjct 32502 CATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGG 32443
Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760
| | |||||| || |||| | | ||| | | ||| ||| ||||| | || ||| |
Sbjct 32442 CAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACAC 32383
Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810
||| || || ||||||||||||||||| || || |||||| |||||||
Sbjct 32382 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 32333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482000704808040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |