Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1525 228 8e-55 seq36034 158 1e-33 seq25410 131 2e-25 seq549 114 1e-20 seq41499 98.7 1e-15 seq7076 82.4 7e-11 >seq1525 Length=329219 Score = 228 bits (252), Expect = 8e-55 Identities = 495/734 (67%), Gaps = 8/734 (1%) Strand=Plus/Minus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || ||||| | ||||| || | ||||| || |||||||||||||| || ||||||||| Sbjct 305175 ACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 305116 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGA-CATAAACACTTTATCACAACCTAG 14022 || ||||| |||||||| |||||||||||| | || ||| ||| | | |||| || Sbjct 305115 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAA-AACCCAG 305057 Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 || | | | ||| || || | ||| | || || || ||| ||| |||||||||| Sbjct 305056 CTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCAT 304997 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC-CT 14141 || || || || || | | || | || | ||||| || || || Sbjct 304996 CCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCACT 304937 Query 14142 --CGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 14199 || |||| | | | | | | | ||||| | | || ||||| || || Sbjct 304936 GACGATTATT-TCTTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACAT 304880 Query 14200 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 | || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||||| Sbjct 304879 CAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGT 304820 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 | || ||||||| ||||||||| || | ||| ||||| | || || || || ||||| Sbjct 304819 GAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAA 304760 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||| || || || ||||| ||||| ||||| | ||||||||| ||| || | | ||| Sbjct 304759 GAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTC 304700 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | ||||| ||||| || | || || || | | || |||||| ||||| || Sbjct 304699 CTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGC 304640 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 || || | | |||| | ||||| | | | || ||| || ||| | || | ||||| Sbjct 304639 GTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATA 304580 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 |||||| || |||||||||||||| || || || || ||||| ||| | ||||| | Sbjct 304579 CATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGT 304520 Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 | || | ||| | || | || ||| |||||||| |||| |||||||| || Sbjct 304519 CATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGC 304460 Query 14620 TGCAAAAAATGCCA 14633 |||| | || |||| Sbjct 304459 TGCAGAGAAAGCCA 304446 >seq36034 Length=1448 Score = 158 bits (174), Expect = 1e-33 Identities = 375/566 (66%), Gaps = 3/566 (1%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || | ||| | ||||| || | ||||| || ||| |||||||||| || ||| Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| ||||||| |||||||||||| | | || || || | || Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || || || | | | ||| || || | || || || || || ||| ||| ||| Sbjct 445 CCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAA 386 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || || || || | | || | || || | |||||| || Sbjct 385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 326 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197 || | | || || | | | | | ||||| | | || ||||| || Sbjct 325 GCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 266 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 || | || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||| Sbjct 265 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 206 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317 || | | ||||||| ||||||||||| | ||| ||||| | || || || || ||| Sbjct 205 GTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 146 Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14377 ||| ||||| || |||||| |||| ||| | ||||||||| ||| || | |||| Sbjct 145 AAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTG 89 Query 14378 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | | ||||| ||||| || | || || || | | || |||||| |||||| Sbjct 88 TCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATA 29 Query 14438 GCATTAAATAAATGTTCCTTCTCTTT 14463 || || || | | |||| | ||||| Sbjct 28 GCGTTGAAGAGAAATTCCCTTTCTTT 3 >seq25410 Length=10104 Score = 131 bits (144), Expect = 2e-25 Identities = 228/327 (70%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 |||||||||||||| || ||||||||||| || || || || ||||| ||||| ||| Sbjct 10099 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGCT 10040 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 || | || || ||| | ||| | || |||| ||||||| ||||| |||||| Sbjct 10039 TCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATCA 9980 Query 14615 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT 14674 || |||||||| || |||| | | ||| || ||| ||| ||| | || | Sbjct 9979 CTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 9920 Query 14675 TTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAA 14732 | ||| | ||| || ||||| ||||| || || || ||| |||||||||| ||| Sbjct 9919 TCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862 Query 14733 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14792 ||||||| |||||||| ||| || || | ||| |||||||| | ||||| | | Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA-GTGG 9803 Query 14793 AAGATG-TTTCTTTAAGAATTGGTTCC 14818 | || ||||||| |||| ||||||| Sbjct 9802 CGGGTGTTTTCTTTCAGAAGTGGTTCC 9776 >seq549 Length=511996 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 260575 CTACGACACGTTCTCC 260590 >seq41499 Length=968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 919 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 860 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| |||||||| |||||||||||| | | || || || | || Sbjct 859 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 800 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || || || | | | ||| || || | || || || || || ||| ||| ||| Sbjct 799 CCCAGCTCCAGCATAAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCAA 740 Query 14078 TTCATACCTATTAGTTTTACAGG 14100 ||||| || || || || || || Sbjct 739 TTCATCCCAATGAGCTTCACTGG 717 >seq7076 Length=122421 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700 |||||||| || |||||| | |||| ||| || || |||| |||| | || | Sbjct 32502 CATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGG 32443 Query 11701 CCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11760 | | |||||| || |||| | | ||| | | ||| ||| ||||| | || ||| | Sbjct 32442 CAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACAC 32383 Query 11761 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11810 ||| || || ||||||||||||||||| || || |||||| ||||||| Sbjct 32382 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATG 32333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482000704808040