Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1525 167 2e-36 seq3603 116 3e-21 seq561 109 5e-19 seq17051 105 6e-18 seq5560 98.7 9e-16 seq10582 93.3 4e-14 seq1014 89.7 5e-13 seq2543 87.8 2e-12 >seq1525 Length=329219 Score = 167 bits (184), Expect = 2e-36 Identities = 591/911 (65%), Gaps = 12/911 (1%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 |||||||||||| || ||| || ||||| | | |||| | ||||| || ||||| | Sbjct 304259 GATGAACCACTTCTGAAAGGAAACCCCCGCCGCTCTGTCTTCTTTCCTATCGAATACCGT 304318 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || ||||| | |||| || | || || || || | ||||| | || || || ||| Sbjct 304319 GATGTTTGGCAGATGTGTAAGCACGCTGAGGCTTCCTGCTGGACGGCTGAGGAGGTGGAC 304378 Query 57627 CTGTCTAAGGA-TCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || || |||| | ||| | |||| |||| || |||||| |||| ||| Sbjct 304379 CTTTCCTAGGACATTCAGC-ACCGGGAAGCCCTGAAGCCTGAGGAGAGACATTTCATTTC 304437 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 || || |||| || | || ||| ||||| | || || || || |||| || | Sbjct 304438 GCATGTCCTGGCTTTCTCTGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCG 304497 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCA 57804 || ||||||| || ||||||| || | || ||| || || || ||| | |||| Sbjct 304498 GCTTAGCCAAGAAGCTCAGATGACGGAAGCCCG-TGATTTCTATGGCTTCCAAATTGCCA 304556 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | |||||| | ||||| ||||||||| || |||| || || ||||| || || | Sbjct 304557 TGGAAAACATACATTCGGAAATGTATAGTCTCCTCAATGACACTTACGTTAAAGATTCCA 304616 Query 57865 ACGAGAAACGTA--GACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922 | ||||| | | || |||||||| || || |||||||| | |||||||| Sbjct 304617 A--AGAAAGGGAATCTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGC 304674 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGC 57982 ||| ||| | | ||||| | | | ||| |||| | || | | || || Sbjct 304675 AGATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCTACGTATGGAGAACGTGTCATAGC 304734 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 || ||||| || ||||| || |||||||| || ||||| | ||||| ||| | || Sbjct 304735 CTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAA 304794 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGG 58101 |||||| || |||||||||||||| || ||| ||| || | || | || | ||||||| Sbjct 304795 GAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTAT-TAGCAGAGACGAGG 304853 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGG 58161 || | || ||| ||||| ||||| |||| | ||| | | | ||||| || | Sbjct 304854 GTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACACAAACCTTCGGAGC 304913 Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221 | | || || || ||| | || || | | ||| | ||| |||| || | Sbjct 304914 AGAGAGTCAAAGAAATAATCGTCAGTGCAGTTAGGCTAGAACAGGAGCGCCTCACGGAGG 304973 Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281 || | | ||| | |||| ||||| || ||||||| ||||||| | || Sbjct 304974 CCTCAACAGTGAAGCTCATCGGGATGAATTGTGCTTTGATGAAGCAGTACATCAAATTCC 305033 Query 58282 TTGCCGACAGACTTTTGCTCGAACT-GATTGGAGAGCGTCATTACAACACGAAAAATCCG 58340 | || ||||||||| |||| || || | || || | || | | ||||||| Sbjct 305034 TGGCAGACAGACTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCTGAGTAG-AAAATCCA 305092 Query 58341 TTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTT 58400 ||||| |||||| | || || || || || ||||| ||||| || || || | ||| Sbjct 305093 TTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTA 305152 Query 58401 AGCGAATATCA 58411 |||| ||||| Sbjct 305153 GGCGAGTATCA 305163 >seq3603 Length=202440 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| || || || ||||| || || ||||| Sbjct 21193 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 21134 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 21133 CCTAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 21074 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 21073 CCTGTCTCTGTCTGAGACTCAATGATGGC 21045 >seq561 Length=508305 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| |||||||| || || ||||| |||| || ||||| Sbjct 125667 AATATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCC 125726 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | ||| | | |||| || || | || |||||||||||| | || || ||| Sbjct 125727 TGCGATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 125786 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 125787 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 125845 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | ||||||||||| || | ||||| Sbjct 125846 CAACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACT 125887 >seq17051 Length=38469 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || ||||| Sbjct 11244 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 11303 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || |||||||||||| | || | |||| Sbjct 11304 TCGGATACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGAC 11363 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 | ||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 11364 CGGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 11422 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 11423 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 11464 >seq5560 Length=149305 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | ||||| |||||||| | ||||| |||| |||||||| Sbjct 93192 AATATGCAGATTTTCTTGAAGACCCTGACAGGGATGGGCATCACTCTCGAGGTTGAACCC 93251 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307 || || | |||| ||| | || ||| |||||||||||| | || || | Sbjct 93252 TCGGATGCAATAGAAAAATGTAAAG-GCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTG 93310 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 ||||||| | || || || |||||||| || ||||||| | | | ||| || || Sbjct 93311 ACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 93369 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || ||||||||||| ||| | ||||| Sbjct 93370 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACT 93413 >seq10582 Length=81843 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || ||||| Sbjct 38745 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 38686 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | | |||||||||||| | || || ||| Sbjct 38685 TCGGATACAATAGAAAACGTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGAC 38626 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || || || |||||||| || ||||||| ||| || || || Sbjct 38625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 38566 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | || |||||||| || | ||||| Sbjct 38565 AACATTCAAAAGGAGTTCACGCTTCATCTTGTGTTGAGACT 38525 >seq1014 Length=401283 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || ||||| | || || || || Sbjct 41719 ATGCAGATCTTAGTGAAGACCTTGACGGGCAAGACCATCACTCTAGAGGTCGAGCCCAGT 41660 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||| ||| | || || |||||| Sbjct 41659 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 41600 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||||||| |||| || ||| || || ||||| Sbjct 41599 CAGCGTCTGATTTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTATAAT 41540 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || |||| ||| | ||| | || || Sbjct 41539 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGG 41493 >seq2543 Length=251032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 ||| || |||| ||||| ||||| ||||| || ||||| | || || || || || Sbjct 121806 GCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGCCCAGTGA 121747 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || || | | || || | || ||| ||||||||| | || ||||||||||| Sbjct 121746 CACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCC-CCCGACCAGCA 121688 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACAT 31374 | | || || || || ||||||||| |||||||| ||||| ||||| ||||| Sbjct 121687 GAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCTGCACTATTTCTGATTACAACAT 121628 Query 31375 TCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||||| || | || ||||| || Sbjct 121627 CCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGG 121583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445447660307760