Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 167 2e-36
seq3603 116 3e-21
seq561 109 5e-19
seq17051 105 6e-18
seq5560 98.7 9e-16
seq10582 93.3 4e-14
seq1014 89.7 5e-13
seq2543 87.8 2e-12
>seq1525
Length=329219
Score = 167 bits (184), Expect = 2e-36
Identities = 591/911 (65%), Gaps = 12/911 (1%)
Strand=Plus/Plus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
|||||||||||| || ||| || ||||| | | |||| | ||||| || ||||| |
Sbjct 304259 GATGAACCACTTCTGAAAGGAAACCCCCGCCGCTCTGTCTTCTTTCCTATCGAATACCGT 304318
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
|| ||||| | |||| || | || || || || | ||||| | || || || |||
Sbjct 304319 GATGTTTGGCAGATGTGTAAGCACGCTGAGGCTTCCTGCTGGACGGCTGAGGAGGTGGAC 304378
Query 57627 CTGTCTAAGGA-TCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685
|| || |||| | ||| | |||| |||| || |||||| |||| |||
Sbjct 304379 CTTTCCTAGGACATTCAGC-ACCGGGAAGCCCTGAAGCCTGAGGAGAGACATTTCATTTC 304437
Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745
|| || |||| || | || ||| ||||| | || || || || |||| || |
Sbjct 304438 GCATGTCCTGGCTTTCTCTGCAGCAAGTGATGGCGTAGTAAATGAAAACCTGGTGGAGCG 304497
Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCA 57804
|| ||||||| || ||||||| || | || ||| || || || ||| | ||||
Sbjct 304498 GCTTAGCCAAGAAGCTCAGATGACGGAAGCCCG-TGATTTCTATGGCTTCCAAATTGCCA 304556
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864
| |||||| | ||||| ||||||||| || |||| || || ||||| || || |
Sbjct 304557 TGGAAAACATACATTCGGAAATGTATAGTCTCCTCAATGACACTTACGTTAAAGATTCCA 304616
Query 57865 ACGAGAAACGTA--GACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGC 57922
| ||||| | | || |||||||| || || |||||||| | ||||||||
Sbjct 304617 A--AGAAAGGGAATCTCTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGC 304674
Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGC 57982
||| ||| | | ||||| | | | ||| |||| | || | | || ||
Sbjct 304675 AGATTGGGCCTTGCGCTGGATCGAGGACACAGAGGCTACGTATGGAGAACGTGTCATAGC 304734
Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042
|| ||||| || ||||| || |||||||| || ||||| | ||||| ||| | ||
Sbjct 304735 CTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAA 304794
Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGG 58101
|||||| || |||||||||||||| || ||| ||| || | || | || | |||||||
Sbjct 304795 GAAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACTTAT-TAGCAGAGACGAGG 304853
Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGG 58161
|| | || ||| ||||| ||||| |||| | ||| | | | ||||| || |
Sbjct 304854 GTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACACAAACCTTCGGAGC 304913
Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221
| | || || || ||| | || || | | ||| | ||| |||| || |
Sbjct 304914 AGAGAGTCAAAGAAATAATCGTCAGTGCAGTTAGGCTAGAACAGGAGCGCCTCACGGAGG 304973
Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281
|| | | ||| | |||| ||||| || ||||||| ||||||| | ||
Sbjct 304974 CCTCAACAGTGAAGCTCATCGGGATGAATTGTGCTTTGATGAAGCAGTACATCAAATTCC 305033
Query 58282 TTGCCGACAGACTTTTGCTCGAACT-GATTGGAGAGCGTCATTACAACACGAAAAATCCG 58340
| || ||||||||| |||| || || | || || | || | | |||||||
Sbjct 305034 TGGCAGACAGACTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCTGAGTAG-AAAATCCA 305092
Query 58341 TTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTT 58400
||||| |||||| | || || || || || ||||| ||||| || || || | |||
Sbjct 305093 TTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGTA 305152
Query 58401 AGCGAATATCA 58411
|||| |||||
Sbjct 305153 GGCGAGTATCA 305163
>seq3603
Length=202440
Score = 116 bits (128), Expect = 3e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || |||||||| ||||| || || || ||||| || || |||||
Sbjct 21193 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 21134
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|| | || ||||||||| || ||||| || ||||| ||||||||||||||||| ||
Sbjct 21133 CCTAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 21074
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 21073 CCTGTCTCTGTCTGAGACTCAATGATGGC 21045
>seq561
Length=508305
Score = 109 bits (120), Expect = 5e-19
Identities = 159/222 (72%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| |||||||| || || ||||| |||| || |||||
Sbjct 125667 AATATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCC 125726
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
| ||| | | |||| || || | || |||||||||||| | || || |||
Sbjct 125727 TGCGATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 125786
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||||| | | | ||| || || ||
Sbjct 125787 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 125845
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || | ||||||||||| || | |||||
Sbjct 125846 CAACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACT 125887
>seq17051
Length=38469
Score = 105 bits (116), Expect = 6e-18
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| ||||| || || || ||||| |||| || |||||
Sbjct 11244 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 11303
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || |||||||||||| | || | ||||
Sbjct 11304 TCGGATACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGAC 11363
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
| ||| | || || || |||||||| || ||||||| | | | ||| || || ||
Sbjct 11364 CGGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 11422
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 11423 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 11464
>seq5560
Length=149305
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/224 (71%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||| | ||||| |||||||| | ||||| |||| ||||||||
Sbjct 93192 AATATGCAGATTTTCTTGAAGACCCTGACAGGGATGGGCATCACTCTCGAGGTTGAACCC 93251
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307
|| || | |||| ||| | || ||| |||||||||||| | || || |
Sbjct 93252 TCGGATGCAATAGAAAAATGTAAAG-GCCAAGAGCCAGGACAAGGAAGGAATTCCTCCTG 93310
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366
||||||| | || || || |||||||| || ||||||| | | | ||| || ||
Sbjct 93311 ACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGAC 93369
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| ||||||||||| || || ||||||||||| ||| | |||||
Sbjct 93370 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTAGTGAGACT 93413
>seq10582
Length=81843
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| ||||| || || || ||||| |||| || |||||
Sbjct 38745 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 38686
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | | |||||||||||| | || || |||
Sbjct 38685 TCGGATACAATAGAAAACGTAAAGGCCAAGGTCCAGGACAAGGAAGGAATTCCTCCTGAC 38626
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||| | || || || |||||||| || ||||||| ||| || || ||
Sbjct 38625 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 38566
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || | || |||||||| || | |||||
Sbjct 38565 AACATTCAAAAGGAGTTCACGCTTCATCTTGTGTTGAGACT 38525
>seq1014
Length=401283
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| |||| ||||| || ||||| | || || || ||
Sbjct 41719 ATGCAGATCTTAGTGAAGACCTTGACGGGCAAGACCATCACTCTAGAGGTCGAGCCCAGT 41660
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | ||| |||||||| ||| | || || ||||||
Sbjct 41659 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 41600
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| ||||||||| |||| || ||| || || |||||
Sbjct 41599 CAGCGTCTGATTTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTATAAT 41540
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || ||||| || || || || |||| ||| | ||| | || ||
Sbjct 41539 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGG 41493
>seq2543
Length=251032
Score = 87.8 bits (96), Expect = 2e-12
Identities = 155/225 (69%), Gaps = 1/225 (0%)
Strand=Plus/Minus
Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254
||| || |||| ||||| ||||| ||||| || ||||| | || || || || ||
Sbjct 121806 GCAGATCTTCGGGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGCCCAGTGA 121747
Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314
|| || | | || || | || ||| ||||||||| | || |||||||||||
Sbjct 121746 CACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCC-CCCGACCAGCA 121688
Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACAT 31374
| | || || || || ||||||||| |||||||| ||||| ||||| |||||
Sbjct 121687 GAGGCTCATCTTTGCAGGCAAACAGCTGGAAGACGGCTGCACTATTTCTGATTACAACAT 121628
Query 31375 TCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| ||||| || || || || ||||| || | || ||||| ||
Sbjct 121627 CCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGTCTAAGGGGTGG 121583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445447660307760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |