Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq36034 120 6e-22 seq549 86.0 1e-11 >seq36034 Length=1448 Score = 120 bits (132), Expect = 6e-22 Identities = 290/435 (67%), Gaps = 8/435 (2%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 ||||||| |||||| ||||||| ||||| |||| | || ||||| || |||||| || Sbjct 120 GCCTTTGTTGCAGTGGAAGGAA---TCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 176 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 || || | ||| | |||| | ||||| | |||||||| | ||| || ||||| Sbjct 177 AAAAAACGAGGTCTGATGCCCAGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAG 236 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 ||| | || | |||||||| ||| || |||| ||| | | | | | || || Sbjct 237 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---CCTGCTACACAAACCTTC- 292 Query 102101 AGAGAAAGGATTC-TTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159 ||| | || || ||||| || | || || | || ||||| || || ||||| Sbjct 293 GGAGCAGAGAGTCAAAGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCAC 352 Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 | ||||||| || || | | || ||||| |||| ||||||| |||||||| || Sbjct 353 GGAGGCCCTGCCAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGA 412 Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279 |||||||||||| | ||| || | || |||| | ||| | | || || Sbjct 413 ATTTGTGGCAGACAGACTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGAAAA 472 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 || || || |||| |||||||| || || ||||| ||||| | ||| ||||| Sbjct 473 TCCATTTGACTTTATGGGGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAAGAG 532 Query 102340 AGTCGCCGAGTATCA 102354 ||| | ||||||||| Sbjct 533 AGTAGGCGAGTATCA 547 >seq549 Length=511996 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||| ||||||||||||||| |||| | || ||||| || |||||| Sbjct 260578 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 260519 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || | ||| | |||| || ||||| | |||||||| | ||| || ||| Sbjct 260518 CTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 260459 Query 102038 GA 102039 || Sbjct 260458 GA 260457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988858720588865