Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq36034 120 6e-22
seq549 86.0 1e-11
>seq36034
Length=1448
Score = 120 bits (132), Expect = 6e-22
Identities = 290/435 (67%), Gaps = 8/435 (2%)
Strand=Plus/Plus
Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980
||||||| |||||| ||||||| ||||| |||| | || ||||| || |||||| ||
Sbjct 120 GCCTTTGTTGCAGTGGAAGGAA---TCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 176
Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040
|| || | ||| | |||| | ||||| | |||||||| | ||| || |||||
Sbjct 177 AAAAAACGAGGTCTGATGCCCAGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAG 236
Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100
||| | || | |||||||| ||| || |||| ||| | | | | | || ||
Sbjct 237 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA---CCTGCTACACAAACCTTC- 292
Query 102101 AGAGAAAGGATTC-TTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159
||| | || || ||||| || | || || | || ||||| || || |||||
Sbjct 293 GGAGCAGAGAGTCAAAGAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCAC 352
Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219
| ||||||| || || | | || ||||| |||| ||||||| |||||||| ||
Sbjct 353 GGAGGCCCTGCCAGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGA 412
Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279
|||||||||||| | ||| || | || |||| | ||| | | || ||
Sbjct 413 ATTTGTGGCAGACAGACTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGAAAA 472
Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339
|| || || |||| |||||||| || || ||||| ||||| | ||| |||||
Sbjct 473 TCCATTTGACTTTATGGGGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAAGAG 532
Query 102340 AGTCGCCGAGTATCA 102354
||| | |||||||||
Sbjct 533 AGTAGGCGAGTATCA 547
>seq549
Length=511996
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||| ||||| ||||||||||||||| |||| | || ||||| || ||||||
Sbjct 260578 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 260519
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
|||| || | ||| | |||| || ||||| | |||||||| | ||| || |||
Sbjct 260518 CTCAAAAAACGAGGTCTGATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGAC 260459
Query 102038 GA 102039
||
Sbjct 260458 GA 260457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 988858720588865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |