Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1525 280 1e-70 seq36034 235 5e-57 seq549 134 1e-26 seq1670 120 3e-22 seq25410 98.7 9e-16 seq3603 96.9 3e-15 >seq1525 Length=329219 Score = 280 bits (310), Expect = 1e-70 Identities = 459/649 (71%), Gaps = 15/649 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| || | |||| || | || || || |||||||| ||||| | Sbjct 305176 CACTCCCATCYTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCA 305118 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||||| ||| ||||| | ||| ||| || || | |||| | Sbjct 305117 GTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAACCCA 305058 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| ||||| | ||||| || ||||| ||| ||| |||||||| Sbjct 305057 GCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCA 304998 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| | || | || | ||||| ||||| |||| ||| Sbjct 304997 TCCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCAC 304938 Query 11568 CAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | |||||| | || || | || || ||| |||| | ||||| ||||| Sbjct 304937 TGACGATTATTT-CTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATC 304879 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| ||||| |||||||| |||||||| || || |||||||| |||||||| Sbjct 304878 AGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTG 304819 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | |||||||||| ||||||||| || | ||| ||||| | ||||| |||||||||||| Sbjct 304818 AGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 304759 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCT-TGT-TGC 11801 || || || ||||| || ||||| |||| || | ||||||||| || ||| ||| | | Sbjct 304758 AAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCC 304699 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 | | ||||| ||||||||| || ||||| ||||| || |||||| || || | Sbjct 304698 TCG--ATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGG 304641 Query 11862 CGTTAAATAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919 |||| || | | ||| ||||| | |||| | || || || || | | | ||| Sbjct 304640 CGTTGAAGAGA--GATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACT 304583 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 ||||||||| ||||| || |||||||| || ||||| || ||||||||| Sbjct 304582 ATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 304534 >seq36034 Length=1448 Score = 235 bits (260), Expect = 5e-57 Identities = 384/545 (70%), Gaps = 10/545 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| | |||| | ||||| || | |||| || | || | || |||||||| ||||| | Sbjct 560 CACTCTCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTAGTCTTCCCTTCCA 502 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| | |||||||| ||| ||||| | ||| |||| || || | |||| | Sbjct 501 GTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA 442 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| ||||| || ||||| || ||||| ||| ||| ||||||| Sbjct 441 GCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCA 382 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| || | || | || | ||||||| |||||| |||| |||| Sbjct 381 TCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT 322 Query 11568 CAATGATTATCGACGTTATAACT-TCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 | |||||| | || || | || || ||| |||| | ||||| ||||| Sbjct 321 TGACGATTATTT-CTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATC 263 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| ||||| |||||||| |||||||| || || |||||||| |||||||| Sbjct 262 AGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTG 203 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | | |||||||| ||||||||||| | ||| ||||| | ||||| |||||||||||| Sbjct 202 AGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 143 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGCTA 11803 ||||| ||||| || |||| ||| | || | ||||||||| || ||| ||| Sbjct 142 ---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGTCC 86 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| ||||||||| | ||||| ||||| || |||||| || |||||| Sbjct 85 CCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCG 26 Query 11864 TTAAA 11868 || || Sbjct 25 TTGAA 21 >seq549 Length=511996 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | |||||||||| ||||||||||| Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 260576 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 260577 ACGACACGTTCTCC 260590 >seq1670 Length=315515 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 206374 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 206433 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 206434 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 206493 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 206494 CCACCACCCTTTCCCC 206509 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| | Sbjct 209809 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 209867 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 209868 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 209924 >seq25410 Length=10104 Score = 98.7 bits (108), Expect = 9e-16 Identities = 198/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 |||||||||||| ||||| || |||||||| || ||||| || ||||||||||| | || Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041 Query 11977 CTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036 || | | ||| || || ||| | ||| | || | |||||||| || ||||| Sbjct 10040 TTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATC 9981 Query 12037 ACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTT 12096 ||| | |||||| || || || | ||| || || ||| | || || | | Sbjct 9980 ACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 9921 Query 12097 ATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 ||||| | | | || || || | || || |||||| | |||||||| ||| | Sbjct 9920 TTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTC 9861 Query 12157 TGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | || |||||||| | ||| |||||||| || | ||||| || || || || Sbjct 9860 AGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807 >seq3603 Length=202440 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 28560 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28501 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 28500 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 28441 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 28440 CTGTTTCTTATACCAT 28425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||| Sbjct 30792 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 30733 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC--A 36980 ||| || || |||||||| || || || ||||| |||||||||| ||| | ||| Sbjct 30732 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCCA--TCTTGAGTACGGT 30675 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 ||| ||||| || ||||| || || ||||| | ||| || Sbjct 30674 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTT 30636 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| || || || | | || Sbjct 3645 GTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 3586 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 ||||||||||| || |||| ||||| | |||||| || | |||||||||||| | | Sbjct 3585 TATGTTTCTATAGCAGCATCAATATCTTCTTTGTGAATGCCCACAGATACCCTCATCAAC 3526 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 3525 ATATGCTGTGGTCTTTC 3509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468189787198320