Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq18172 268 8e-67 seq293 145 7e-30 seq15026 134 1e-26 seq721 107 2e-18 seq1907 93.3 4e-14 seq16886 89.7 4e-13 seq1434 89.7 4e-13 >seq18172 Length=33122 Score = 268 bits (296), Expect = 8e-67 Identities = 498/727 (69%), Gaps = 9/727 (1%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| || |||| ||| || ||||| ||| || || ||||| ||||| Sbjct 27454 AGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 27395 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || |||||| |||| ||| ||||||| || | ||||||||| Sbjct 27394 ACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTGCGATCATGTA-----GCAGGGCGTAG 27340 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||| | || || || | ||||||||||| | ||||||||||||||||||||| Sbjct 27339 CTGGCGATGYTGAAGGGCACACYCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAG 27280 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||||| || ||||||| ||||| || | |||| || || || || ||||| Sbjct 27279 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATG 27220 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | ||| || || ||||| || |||| | ||| | | |||| || | Sbjct 27219 AGAGGGAGATCTTTCGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTT 27160 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || ||| || ||| | |||| || || || || ||| | || | | | Sbjct 27159 TTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATGC 27100 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | |||| || | ||||||||| |||||||| || || || || || || | ||| Sbjct 27099 ATATCTTTGTATTCGGTCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCC 27040 Query 21333 CCCTC-GCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGT 21390 || || || ||| ||| ||| | || | |||| ||| | |||||||| | || | Sbjct 27039 CCTTCTGCTCTGGT-GGAGAATCCCAG-GCTGTCCAAGAAGTCTCGGGACCCATTGGCAT 26982 Query 21391 CCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACC 21450 |||| ||||| || || | ||||| || | | || ||||| ||| ||||||||| Sbjct 26981 CCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACC 26922 Query 21451 ACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACT 21510 |||||||||||||| || ||| | || || || | |||||| || | ||||||||| | Sbjct 26921 ACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACATTTGGTTGTCAGCAGAGGAAATT 26862 Query 21511 CGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCC 21570 | || || ||| | || || ||||| | |||||||| ||| |||||| |||||| | Sbjct 26861 CATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGC 26802 Query 21571 TGTCCTCCCTCTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCT 21630 ||| ||| || | | |||| | || || | ||| |||||||||||| || Sbjct 26801 GGTCATCCTTCCGAAAGCCGCAGCGGAGGATGTGCTCGATCTGCCCCAAGTACTGCATCT 26742 Query 21631 CGCCGTG 21637 | ||||| Sbjct 26741 CCCCGTG 26735 >seq293 Length=643942 Score = 145 bits (160), Expect = 7e-30 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 264060 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 264001 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 264000 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 263941 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||| ||| ||||| || | |||| || || || || ||||| Sbjct 263940 CCATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCAT 263898 >seq15026 Length=49095 Score = 134 bits (148), Expect = 1e-26 Identities = 124/156 (79%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| ||| || || ||||| ||||| ||| |||| || || ||||||| |||| ||| Sbjct 46671 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 46730 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| || || || ||||| |||||||||| ||| || | || || |||||| | Sbjct 46731 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 46790 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 ||| | |||||||||||||||| |||||||||||| Sbjct 46791 GTCTCCTGACCTCTGGTACAGCT-GCAGGACAGCTC 46825 >seq721 Length=458371 Score = 107 bits (118), Expect = 2e-18 Identities = 222/329 (67%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGT-----TTAATTGTTCTTTTAGT 2944 || ||||||||| | ||||| | ||||||| ||| ||| ||||| || | Sbjct 192805 CTTATAAACAGAACTGCCTCCCACTGTCCAGACCATGTCCACTTTATTTGTTGATTCTGG 192746 Query 2945 TTGTATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCG 3004 ||| || ||| | || || || || || || |||| || ||||| || ||||| Sbjct 192745 TTGC----TCAATA-AGTTTTAAGGCTTCATCCAGACTTCTGGCAAGAAAATGAGCTCCC 192691 Query 3005 TGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGC 3064 || || ||||| | |||||| || | || |||||||||||| | | ||| || Sbjct 192690 TGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGCCCTTTAAAGGTCGA 192631 Query 3065 TTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124 ||||| || || ||||| ||||||||| | | |||||||| ||| ||||| || |||| Sbjct 192630 TTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCT 192571 Query 3125 ACAACCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGC 3184 | || || | || | |||||| | || |||||| | ||| || || || ||| Sbjct 192570 TCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGC 192511 Query 3185 CAAGGCATTGTTCCGTTTTTACCAATTCC 3213 || |||| ||||| || ||||| || Sbjct 192510 CAGGGCAGGTCCCCGTTCTTGCCAATGCC 192482 >seq1907 Length=295643 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 59948 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 59889 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | || || ||||| || || ||||| Sbjct 59888 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGATCGATTCTTCTCTGGAATGGAG 59829 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | | || | || | Sbjct 59828 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTGCTGAAGAAGTTGTG 59769 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 59768 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 59720 >seq16886 Length=39300 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || |||| || || ||||| | | Sbjct 11293 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGCACTCCCTGTGGAGGTTCCTTGAGT 11352 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||||| | ||| || ||||| | || | ||| Sbjct 11353 TCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCCCTGGAAAGGAG 11412 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 || || || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 11413 AAGCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGTTGTG 11472 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 11473 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 11521 >seq1434 Length=340472 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || ||||| || || ||||| | | Sbjct 145729 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 145788 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | || || ||||| || || | ||| Sbjct 145789 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGTTCGATTCTTCTCTGGAACGGAG 145848 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| ||| | | | |||||| |||| ||||| | |||| | || || | || | Sbjct 145849 AACCAGGTTTTCCTGCGCATAATCACCAAATTCTGCTTACCTTCTACTGAAGAGGTTGTG 145908 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191 |||||| | || |||||| | ||| || || || ||||| |||| Sbjct 145909 GTCATTCTTTGGAAATACCTGCATTCTTTCCTGAGCCGGGGCCAGGGCA 145957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427477771015440