Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 268 8e-67
seq293 145 7e-30
seq15026 134 1e-26
seq721 107 2e-18
seq1907 93.3 4e-14
seq16886 89.7 4e-13
seq1434 89.7 4e-13
>seq18172
Length=33122
Score = 268 bits (296), Expect = 8e-67
Identities = 498/727 (69%), Gaps = 9/727 (1%)
Strand=Plus/Minus
Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972
||||||| ||| || |||| ||| || ||||| ||| || || ||||| |||||
Sbjct 27454 AGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 27395
Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032
|||||||| || || |||||| |||| ||| ||||||| || | |||||||||
Sbjct 27394 ACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTGCGATCATGTA-----GCAGGGCGTAG 27340
Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
||||||||| | || || || | ||||||||||| | |||||||||||||||||||||
Sbjct 27339 CTGGCGATGYTGAAGGGCACACYCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAG 27280
Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
|||||||| || ||||||| ||||| || | |||| || || || || |||||
Sbjct 27279 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATG 27220
Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212
| | ||| || || ||||| || |||| | ||| | | |||| || |
Sbjct 27219 AGAGGGAGATCTTTCGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAGGGTTGGTT 27160
Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272
|| ||| || ||| | |||| || || || || ||| | || | | |
Sbjct 27159 TTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCTTGATCTGAATAATCTGAATGC 27100
Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332
| |||| || | ||||||||| |||||||| || || || || || || | |||
Sbjct 27099 ATATCTTTGTATTCGGTCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCC 27040
Query 21333 CCCTC-GCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGT 21390
|| || || ||| ||| ||| | || | |||| ||| | |||||||| | || |
Sbjct 27039 CCTTCTGCTCTGGT-GGAGAATCCCAG-GCTGTCCAAGAAGTCTCGGGACCCATTGGCAT 26982
Query 21391 CCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACC 21450
|||| ||||| || || | ||||| || | | || ||||| ||| |||||||||
Sbjct 26981 CCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACC 26922
Query 21451 ACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACT 21510
|||||||||||||| || ||| | || || || | |||||| || | ||||||||| |
Sbjct 26921 ACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACATTTGGTTGTCAGCAGAGGAAATT 26862
Query 21511 CGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCC 21570
| || || ||| | || || ||||| | |||||||| ||| |||||| |||||| |
Sbjct 26861 CATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGC 26802
Query 21571 TGTCCTCCCTCTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCT 21630
||| ||| || | | |||| | || || | ||| |||||||||||| ||
Sbjct 26801 GGTCATCCTTCCGAAAGCCGCAGCGGAGGATGTGCTCGATCTGCCCCAAGTACTGCATCT 26742
Query 21631 CGCCGTG 21637
| |||||
Sbjct 26741 CCCCGTG 26735
>seq293
Length=643942
Score = 145 bits (160), Expect = 7e-30
Identities = 130/163 (80%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
|||||||||||| ||| ||||||| || || || |||||||||||||||||||| || |
Sbjct 264060 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 264001
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 264000 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 263941
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151
||| ||| ||||| || | |||| || || || || |||||
Sbjct 263940 CCATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCAT 263898
>seq15026
Length=49095
Score = 134 bits (148), Expect = 1e-26
Identities = 124/156 (79%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004
||||| ||| || || ||||| ||||| ||| |||| || || ||||||| |||| |||
Sbjct 46671 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 46730
Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064
||||||| || || || ||||| |||||||||| ||| || | || || |||||| |
Sbjct 46731 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 46790
Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100
||| | |||||||||||||||| ||||||||||||
Sbjct 46791 GTCTCCTGACCTCTGGTACAGCT-GCAGGACAGCTC 46825
>seq721
Length=458371
Score = 107 bits (118), Expect = 2e-18
Identities = 222/329 (67%), Gaps = 10/329 (3%)
Strand=Plus/Minus
Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGT-----TTAATTGTTCTTTTAGT 2944
|| ||||||||| | ||||| | ||||||| ||| ||| ||||| || |
Sbjct 192805 CTTATAAACAGAACTGCCTCCCACTGTCCAGACCATGTCCACTTTATTTGTTGATTCTGG 192746
Query 2945 TTGTATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCG 3004
||| || ||| | || || || || || || |||| || ||||| || |||||
Sbjct 192745 TTGC----TCAATA-AGTTTTAAGGCTTCATCCAGACTTCTGGCAAGAAAATGAGCTCCC 192691
Query 3005 TGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGC 3064
|| || ||||| | |||||| || | || |||||||||||| | | ||| ||
Sbjct 192690 TGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGCCCTTTAAAGGTCGA 192631
Query 3065 TTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124
||||| || || ||||| ||||||||| | | |||||||| ||| ||||| || ||||
Sbjct 192630 TTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATTCTGTTTACCT 192571
Query 3125 ACAACCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGC 3184
| || || | || | |||||| | || |||||| | ||| || || || |||
Sbjct 192570 TCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGC 192511
Query 3185 CAAGGCATTGTTCCGTTTTTACCAATTCC 3213
|| |||| ||||| || ||||| ||
Sbjct 192510 CAGGGCAGGTCCCCGTTCTTGCCAATGCC 192482
>seq1907
Length=295643
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || ||||| || || || | || ||||| || ||||| || || ||||| | |
Sbjct 59948 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 59889
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
||||| || | || ||||||||||||| | | || || ||||| || || |||||
Sbjct 59888 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGATCGATTCTTCTCTGGAATGGAG 59829
Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142
||||| || | | |||||||| |||| ||||| || |||| | | || | || |
Sbjct 59828 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTGCTGAAGAAGTTGTG 59769
Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191
|||||| | || |||||| | ||| || || || ||||| ||||
Sbjct 59768 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 59720
>seq16886
Length=39300
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || ||||| || || || | || ||||| || |||| || || ||||| | |
Sbjct 11293 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGCACTCCCTGTGGAGGTTCCTTGAGT 11352
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
||||| || | || ||||||||||||||| | ||| || ||||| | || | |||
Sbjct 11353 TCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCCCTGGAAAGGAG 11412
Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142
|| || || | | |||||||| |||| ||||| || |||| | || || | || |
Sbjct 11413 AAGCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGTTGTG 11472
Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191
|||||| | || |||||| | ||| || || || ||||| ||||
Sbjct 11473 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGGGGCCAGGGCA 11521
>seq1434
Length=340472
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || ||||| || || || | || ||||| || ||||| || || ||||| | |
Sbjct 145729 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTGTGGAGGTTCCTTGAGT 145788
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
||||| || | || ||||||||||||| | | || || ||||| || || | |||
Sbjct 145789 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGTTCGATTCTTCTCTGGAACGGAG 145848
Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142
||||| ||| | | | |||||| |||| ||||| | |||| | || || | || |
Sbjct 145849 AACCAGGTTTTCCTGCGCATAATCACCAAATTCTGCTTACCTTCTACTGAAGAGGTTGTG 145908
Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCA 3191
|||||| | || |||||| | ||| || || || ||||| ||||
Sbjct 145909 GTCATTCTTTGGAAATACCTGCATTCTTTCCTGAGCCGGGGCCAGGGCA 145957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427477771015440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |