Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 132 3e-26
seq36034 95.1 9e-15
>seq1525
Length=329219
Score = 132 bits (146), Expect = 3e-26
Identities = 268/391 (69%), Gaps = 19/391 (5%)
Strand=Plus/Plus
Query 22543 GAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAATATACATGCTGAAATGTAT 22602
|||||| | | ||||||||| || || | || |||||||| |||||| | |||||||||
Sbjct 304523 GAAGCCCGTGATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGAAATGTAT 304582
Query 22603 ACTCAGCTGATTATCACATTAGTAGCTAAAGAG---AATCAAGCCGCAT-TGTTTTCAGC 22658
| || || | | ||| | || |||||| || || | || | | |||| |
Sbjct 304583 AGTCTCCTCAATGACACTTACGT---TAAAGATTCCAAAGAAAGGGAATCTCTCTTCAAC 304639
Query 22659 AGC--TGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGGGC--TGCACAATGGCTGA 22714
| ||| ||||| ||||| || |||||| | ||||| ||| | ||| |
Sbjct 304640 GCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGC--TGGATCG 304697
Query 22715 ATGCCACACA---TAAGTCTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCG 22771
| | |||| | || || | | | |||| || | |||||||| || || ||||||
Sbjct 304698 AGGACACAGAGGCTACGTAT---GGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAGGCA 304754
Query 22772 TCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAG 22831
|| | |||||||| || ||||| | ||||||||||| |||||||| || ||||| |
Sbjct 304755 TCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCG 304814
Query 22832 GGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTT 22891
| | | |||||||| || | |||||| | ||||| ||| |||||||||||||||| |
Sbjct 304815 GCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCT 304874
Query 22892 GTATGCTGTTTAGGCAAATGGCAAACAAACC 22922
| || |||| | || || | |||||||
Sbjct 304875 GCCTGATGTTCAAACACCTGCTACACAAACC 304905
>seq36034
Length=1448
Score = 95.1 bits (104), Expect = 9e-15
Identities = 125/173 (72%), Gaps = 3/173 (2%)
Strand=Plus/Plus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
||||||| || || ||||| || |||||||| || ||||| | |||||||||||
Sbjct 120 GCCTTTGTTGCAGTGGAAGGAATC---TTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 176
Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869
|| ||||| || ||||| | | | |||||||| || | |||||| | |||||
Sbjct 177 AAAAAACGAGGTCTGATGCCCAGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAG 236
Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922
||| |||||||||||||||| || || |||| | || || | |||||||
Sbjct 237 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACACAAACC 289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355985247626809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |