Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1525 132 3e-26 seq36034 95.1 9e-15 >seq1525 Length=329219 Score = 132 bits (146), Expect = 3e-26 Identities = 268/391 (69%), Gaps = 19/391 (5%) Strand=Plus/Plus Query 22543 GAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAATATACATGCTGAAATGTAT 22602 |||||| | | ||||||||| || || | || |||||||| |||||| | ||||||||| Sbjct 304523 GAAGCCCGTGATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGAAATGTAT 304582 Query 22603 ACTCAGCTGATTATCACATTAGTAGCTAAAGAG---AATCAAGCCGCAT-TGTTTTCAGC 22658 | || || | | ||| | || |||||| || || | || | | |||| | Sbjct 304583 AGTCTCCTCAATGACACTTACGT---TAAAGATTCCAAAGAAAGGGAATCTCTCTTCAAC 304639 Query 22659 AGC--TGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGGGC--TGCACAATGGCTGA 22714 | ||| ||||| ||||| || |||||| | ||||| ||| | ||| | Sbjct 304640 GCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGC--TGGATCG 304697 Query 22715 ATGCCACACA---TAAGTCTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCG 22771 | | |||| | || || | | | |||| || | |||||||| || || |||||| Sbjct 304698 AGGACACAGAGGCTACGTAT---GGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAGGCA 304754 Query 22772 TCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAG 22831 || | |||||||| || ||||| | ||||||||||| |||||||| || ||||| | Sbjct 304755 TCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCG 304814 Query 22832 GGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTT 22891 | | | |||||||| || | |||||| | ||||| ||| |||||||||||||||| | Sbjct 304815 GCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCCT 304874 Query 22892 GTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | || |||| | || || | ||||||| Sbjct 304875 GCCTGATGTTCAAACACCTGCTACACAAACC 304905 >seq36034 Length=1448 Score = 95.1 bits (104), Expect = 9e-15 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 ||||||| || || ||||| || |||||||| || ||||| | ||||||||||| Sbjct 120 GCCTTTGTTGCAGTGGAAGGAATC---TTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 176 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 || ||||| || ||||| | | | |||||||| || | |||||| | ||||| Sbjct 177 AAAAAACGAGGTCTGATGCCCAGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAG 236 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 ||| |||||||||||||||| || || |||| | || || | ||||||| Sbjct 237 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGCTACACAAACC 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355985247626809