Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18093 100 3e-16 seq17051 96.9 3e-15 seq561 93.3 4e-14 seq2543 89.7 5e-13 seq10582 87.8 2e-12 seq393 86.0 6e-12 >seq18093 Length=33488 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || | ||| | ||||||||||| || ||||| ||||| Sbjct 2799 GCCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 2858 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| ||||| |||||||| || ||| |||| || | ||||| || || || Sbjct 2859 AAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 2918 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| || || | | || | ||||| |||||||||| Sbjct 2919 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 2978 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 2979 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 3026 >seq17051 Length=38469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 11449 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 11391 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||| | ||| |||| || ||||| ||||| ||| || Sbjct 11390 CTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCCTTGTCCTGGATCTT 11331 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||||| ||| || | ||| || ||||| | || | ||||| || || Sbjct 11330 GGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGT 11271 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 11270 CAGGGTCTTCACGAAAATCTGCATA 11246 >seq561 Length=508305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCA 139630 |||| ||||||||||| || || || || | || | ||||| || || || |||||| Sbjct 125862 ACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCCAGCA 125804 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 ||||||| | |||||| || ||||| || ||||| ||||| ||| || |||| Sbjct 125803 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACG 125744 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | ||| | ||| ||| ||| || ||||| | || | ||||| || |||| || || Sbjct 125743 TTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTC 125684 Query 139751 ACGAATATTTGCATA 139765 ||||| || |||||| Sbjct 125683 ACGAAAATCTGCATA 125669 >seq2543 Length=251032 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || | || ||| | || | ||| | ||||||||||| || ||||| ||||| Sbjct 121582 GCCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 121641 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| |||||||| || ||| |||| || | ||||| ||||| || Sbjct 121642 AATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG-GG 121700 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| || || | | | | ||||| |||||||||| Sbjct 121701 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCAC 121760 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| |||| || || |||| || ||| || Sbjct 121761 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGCGTA 121809 >seq10582 Length=81843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT-GCTCGAGTCTTCGAGCTG 139620 |||| ||| |||| ||||||||||| || || || || || | ||||| || || Sbjct 38540 TGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCA-TCTTCCAGTTG 38598 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | |||||| || ||||| || ||||| ||||| || || Sbjct 38599 CTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGACCTT 38658 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| | || | ||||| || || Sbjct 38659 GGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGT 38718 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 38719 CAGGGTCTTCACGAAAATCTGCATA 38743 >seq393 Length=578971 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||| || ||||| ||||| | |||| ||||| |||||||| || Sbjct 168911 GTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 168970 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || |||||||| || || ||| || || Sbjct 168971 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 169030 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 169031 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 169090 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 169091 TTCACAAAGATCTGCAT 169107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495709295637600