Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 315 1e-80
seq36034 208 1e-48
seq25410 159 5e-34
seq549 147 3e-30
seq3603 131 2e-25
seq7076 120 4e-22
seq27717 116 5e-21
seq1670 98.7 1e-15
seq3798 87.8 3e-12
>seq1525
Length=329219
Score = 315 bits (348), Expect = 1e-80
Identities = 525/757 (69%), Gaps = 5/757 (1%)
Strand=Plus/Minus
Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713
|||| |||||||| | || || || || || | || || || || ||||| || |||
Sbjct 305181 GACAKCACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 305122
Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773
|||| ||| ||||| ||||| || ||||| ||||| || ||| || ||||
Sbjct 305121 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAA 305062
Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833
|||| || || | ||| || || | |||| || || ||||||| |||||
Sbjct 305061 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAA 305002
Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893
||||| || || || || |||| ||| | || || || ||||| | ||
Sbjct 305001 TTCATCCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACT 304942
Query 49894 GCATCTGTT-ATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 49952
||| ||| || || | | || | | || ||| || | | ||||| ||
Sbjct 304941 GCA-CTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAA 304883
Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012
||||| || || || || ||||| | |||||||||||| ||||| ||||| ||||||||
Sbjct 304882 CATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAA 304823
Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072
||||| |||||||| || || || || || ||||| ||||| || ||||| || |||||
Sbjct 304822 TGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGA 304763
Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCT 50129
||||||||| ||||| |||||||||||||| | | | |||||||| | | | |
Sbjct 304762 AAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGT 304703
Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189
||| | ||||| |||||||| |||||||| |||||||||||||| || || ||
Sbjct 304702 GTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAAT 304643
Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249
||| || |||||| | | |||| || ||||||||| ||||| || | | |||||
Sbjct 304642 GGCGTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACT 304583
Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309
||||||||||||||| |||||||| ||||| || || || || |||||| | || ||
Sbjct 304582 ATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTC 304523
Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369
|| ||||| ||||| | || || || | | |||||||| |||| || |||||
Sbjct 304522 CGTCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACT 304463
Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406
|||||| | || |||| ||||| || ||||||
Sbjct 304462 TGCTGCAGAGAAAGCCAGGACATGCGAAATGAAATGT 304426
>seq36034
Length=1448
Score = 208 bits (230), Expect = 1e-48
Identities = 378/552 (68%), Gaps = 6/552 (1%)
Strand=Plus/Minus
Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713
||||| |||| ||| | || || || || || | || || | || ||||| || |||
Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506
Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773
|||| ||| ||||| |||| || ||||| ||||| || | ||| || ||||
Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446
Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833
|||| || || | ||| || || |||||||| || || ||||||| |||
Sbjct 445 CCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAA 386
Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893
||||| || || || || ||||| || ||| | || || || || ||||| || ||
Sbjct 385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 326
Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953
|||| || || | | || | | || ||| || | | ||||| |||
Sbjct 325 GCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 266
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||| || || || || ||||| | |||||||||||| ||||| ||||| ||||||||
Sbjct 265 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 206
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
||||| | |||||| || || || ||||| ||||| ||||| || ||||| || ||||||
Sbjct 205 GTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 146
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTG 50130
||||||||||| ||||| ||||||| | | | |||||||| | | | ||
Sbjct 145 ---AAGATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTG 89
Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190
|| ||||| |||||||| | |||||| |||||||||||||| || || ||
Sbjct 88 TCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATA 29
Query 50191 GCATTAAAGAGA 50202
|| || ||||||
Sbjct 28 GCGTTGAAGAGA 17
>seq25410
Length=10104
Score = 159 bits (176), Expect = 5e-34
Identities = 213/296 (72%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304
|||||||||||||| ||||| |||||||| ||||| || || || || ||||||||
Sbjct 10102 AGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGG 10043
Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCG 50364
|| || |||||||| |||||| | ||| || || | || ||||||| ||||| ||
Sbjct 10042 GCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCA 9983
Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424
||||| |||||||| || |||| ||||| || |||| | | || | || | ||
Sbjct 9982 TCACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGG 9923
Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484
| ||| | | || || || || | || || ||||| |||||||||| || |||
Sbjct 9922 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCC 9863
Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
|| || || |||||||| | ||| || ||||| |||| ||| || || || |||||
Sbjct 9862 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807
>seq549
Length=511996
Score = 147 bits (162), Expect = 3e-30
Identities = 107/124 (86%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || ||||
Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574
Query 50102 CAAC 50105
| ||
Sbjct 260575 CTAC 260578
Score = 96.9 bits (106), Expect = 5e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 262451 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 262510
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | || || |||||||| ||||||
Sbjct 262511 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 262556
>seq3603
Length=202440
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 28560 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28501
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||||||||| || ||||||||||| || || ||||| || || | | ||||
Sbjct 28500 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 28441
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 28440 CTGTTTCTTATACCATA 28424
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || || || |||| | |||
Sbjct 19857 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 19798
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||
Sbjct 19797 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 19738
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 19737 TCCAGGTAAATAGC 19724
Score = 93.3 bits (102), Expect = 6e-14
Identities = 126/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| |||||||| || || | || | ||| | |||||| || || || || ||||| |||
Sbjct 24205 TAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAA 24146
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
||||||||||| || |||| |||||| | || || || | || ||||| || ||
Sbjct 24145 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGTAC 24086
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475
| | |||||||| || ||||| | ||||| || ||||| || || || | |||
Sbjct 24085 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 24030
>seq7076
Length=122421
Score = 120 bits (132), Expect = 4e-22
Identities = 180/255 (71%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || || ||||| | ||| ||||||||
Sbjct 32540 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 32481
Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || ||
Sbjct 32480 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTGAC 32421
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| ||| | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 32420 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 32361
Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939
||||| |||||| |||||| ||| || | |||| | || ||||| | |||||
Sbjct 32360 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 32301
Query 47940 TATTCTACCATAGCA 47954
|| ||| ||||||||
Sbjct 32300 TACTCTCCCATAGCA 32286
>seq27717
Length=6327
Score = 116 bits (128), Expect = 5e-21
Identities = 179/255 (70%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || || ||||| | ||| ||||||||
Sbjct 4398 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 4339
Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || ||
Sbjct 4338 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTGAC 4279
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| ||| | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 4278 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 4219
Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939
|||| |||||| |||||| ||| || | |||| | || ||||| | |||||
Sbjct 4218 ATCTACGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 4159
Query 47940 TATTCTACCATAGCA 47954
|| ||| ||||||||
Sbjct 4158 TACTCTCCCATAGCA 4144
>seq1670
Length=315515
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| |||||||| || ||||| ||||| || || | || ||
Sbjct 206376 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 206435
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||||
Sbjct 206436 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 206495
Query 50104 AC 50105
||
Sbjct 206496 AC 206497
>seq3798
Length=195893
Score = 87.8 bits (96), Expect = 3e-12
Identities = 151/218 (69%), Gaps = 5/218 (2%)
Strand=Plus/Plus
Query 47742 ATCTAGAGATTGTACTTCCTCCAGTTCTGGATAATATATAC--GTTGATAGATTAGCTGA 47799
||||| | ||| |||||||| | |||||| ||| | | | ||| | | || |||||
Sbjct 80089 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAAAAAATCTGTTCACAAATGAGCTGT 80148
Query 47800 GCTATTCTATCTCCCGTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACT 47859
|| ||| |||| | | | ||||| | ||| | ||| ||| ||||| || | ||
Sbjct 80149 GCAATTTTATCACACTTTTTTACTTCAAACTTTTCTTTGCCACAATTAAATAGTACAACA 80208
Query 47860 CCTATGTTTCCCCTATAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTT 47916
|| | ||||| ||||||||||| ||||| |||||| || ||| ||| || | ||||
Sbjct 80209 CCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTT 80268
Query 47917 AGTGACAGTCCAGACCTAGGAGCTATTCTACCATAGCA 47954
| || | ||| | ||||||| ||| ||||||||
Sbjct 80269 GCAGCCAAGCTAGAACATGGAGCTACTCTCCCATAGCA 80306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717755210872920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |