Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1525 315 1e-80 seq36034 208 1e-48 seq25410 159 5e-34 seq549 147 3e-30 seq3603 131 2e-25 seq7076 120 4e-22 seq27717 116 5e-21 seq1670 98.7 1e-15 seq3798 87.8 3e-12 >seq1525 Length=329219 Score = 315 bits (348), Expect = 1e-80 Identities = 525/757 (69%), Gaps = 5/757 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 |||| |||||||| | || || || || || | || || || || ||||| || ||| Sbjct 305181 GACAKCACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 305122 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 |||| ||| ||||| ||||| || ||||| ||||| || ||| || |||| Sbjct 305121 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAA 305062 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||| || || | ||| || || | |||| || || ||||||| ||||| Sbjct 305061 CCCAGCTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAA 305002 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || |||| ||| | || || || ||||| | || Sbjct 305001 TTCATCCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACT 304942 Query 49894 GCATCTGTT-ATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 49952 ||| ||| || || | | || | | || ||| || | | ||||| || Sbjct 304941 GCA-CTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAA 304883 Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 ||||| || || || || ||||| | |||||||||||| ||||| ||||| |||||||| Sbjct 304882 CATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAA 304823 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 ||||| |||||||| || || || || || ||||| ||||| || ||||| || ||||| Sbjct 304822 TGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGA 304763 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCT 50129 ||||||||| ||||| |||||||||||||| | | | |||||||| | | | | Sbjct 304762 AAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGT 304703 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| | ||||| |||||||| |||||||| |||||||||||||| || || || Sbjct 304702 GTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAAT 304643 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 ||| || |||||| | | |||| || ||||||||| ||||| || | | ||||| Sbjct 304642 GGCGTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACT 304583 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||||||||| |||||||| ||||| || || || || |||||| | || || Sbjct 304582 ATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTC 304523 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || ||||| ||||| | || || || | | |||||||| |||| || ||||| Sbjct 304522 CGTCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACT 304463 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 |||||| | || |||| ||||| || |||||| Sbjct 304462 TGCTGCAGAGAAAGCCAGGACATGCGAAATGAAATGT 304426 >seq36034 Length=1448 Score = 208 bits (230), Expect = 1e-48 Identities = 378/552 (68%), Gaps = 6/552 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||| ||| | || || || || || | || || | || ||||| || ||| Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 |||| ||| ||||| |||| || ||||| ||||| || | ||| || |||| Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||| || || | ||| || || |||||||| || || ||||||| ||| Sbjct 445 CCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAA 386 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || ||||| || ||| | || || || || ||||| || || Sbjct 385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 326 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 |||| || || | | || | | || ||| || | | ||||| ||| Sbjct 325 GCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 266 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || || || || ||||| | |||||||||||| ||||| ||||| |||||||| Sbjct 265 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 206 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 ||||| | |||||| || || || ||||| ||||| ||||| || ||||| || |||||| Sbjct 205 GTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 146 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTG 50130 ||||||||||| ||||| ||||||| | | | |||||||| | | | || Sbjct 145 ---AAGATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTG 89 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || ||||| |||||||| | |||||| |||||||||||||| || || || Sbjct 88 TCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATA 29 Query 50191 GCATTAAAGAGA 50202 || || |||||| Sbjct 28 GCGTTGAAGAGA 17 >seq25410 Length=10104 Score = 159 bits (176), Expect = 5e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 |||||||||||||| ||||| |||||||| ||||| || || || || |||||||| Sbjct 10102 AGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGG 10043 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCG 50364 || || |||||||| |||||| | ||| || || | || ||||||| ||||| || Sbjct 10042 GCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCA 9983 Query 50365 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT 50424 ||||| |||||||| || |||| ||||| || |||| | | || | || | || Sbjct 9982 TCACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGG 9923 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 | ||| | | || || || || | || || ||||| |||||||||| || ||| Sbjct 9922 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCC 9863 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || || || |||||||| | ||| || ||||| |||| ||| || || || ||||| Sbjct 9862 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807 >seq549 Length=511996 Score = 147 bits (162), Expect = 3e-30 Identities = 107/124 (86%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || |||| Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||||||||||| Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574 Query 50102 CAAC 50105 | || Sbjct 260575 CTAC 260578 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 262451 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 262510 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || |||||||| |||||| Sbjct 262511 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 262556 >seq3603 Length=202440 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 28560 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28501 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 28500 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 28441 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 28440 CTGTTTCTTATACCATA 28424 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 19857 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 19798 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 19797 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 19738 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 19737 TCCAGGTAAATAGC 19724 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | |||||| || || || || ||||| ||| Sbjct 24205 TAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAA 24146 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | || || || | || ||||| || || Sbjct 24145 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGTAC 24086 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 24085 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 24030 >seq7076 Length=122421 Score = 120 bits (132), Expect = 4e-22 Identities = 180/255 (71%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 32540 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 32481 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || || Sbjct 32480 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTGAC 32421 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 32420 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 32361 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| ||| || | |||| | || ||||| | ||||| Sbjct 32360 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 32301 Query 47940 TATTCTACCATAGCA 47954 || ||| |||||||| Sbjct 32300 TACTCTCCCATAGCA 32286 >seq27717 Length=6327 Score = 116 bits (128), Expect = 5e-21 Identities = 179/255 (70%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||||| | ||| |||||||| Sbjct 4398 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 4339 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || || Sbjct 4338 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTGAC 4279 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||||| || | || || | ||||| ||||||||||| Sbjct 4278 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 4219 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 |||| |||||| |||||| ||| || | |||| | || ||||| | ||||| Sbjct 4218 ATCTACGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 4159 Query 47940 TATTCTACCATAGCA 47954 || ||| |||||||| Sbjct 4158 TACTCTCCCATAGCA 4144 >seq1670 Length=315515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| || ||||| ||||| || || | || || Sbjct 206376 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 206435 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 206436 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 206495 Query 50104 AC 50105 || Sbjct 206496 AC 206497 >seq3798 Length=195893 Score = 87.8 bits (96), Expect = 3e-12 Identities = 151/218 (69%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 47742 ATCTAGAGATTGTACTTCCTCCAGTTCTGGATAATATATAC--GTTGATAGATTAGCTGA 47799 ||||| | ||| |||||||| | |||||| ||| | | | ||| | | || ||||| Sbjct 80089 ATCTAAAACTTGAACTTCCTCTATTTCTGGGTAAAAAAAATCTGTTCACAAATGAGCTGT 80148 Query 47800 GCTATTCTATCTCCCGTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACT 47859 || ||| |||| | | | ||||| | ||| | ||| ||| ||||| || | || Sbjct 80149 GCAATTTTATCACACTTTTTTACTTCAAACTTTTCTTTGCCACAATTAAATAGTACAACA 80208 Query 47860 CCTATGTTTCCCCTATAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTT 47916 || | ||||| ||||||||||| ||||| |||||| || ||| ||| || | |||| Sbjct 80209 CCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTT 80268 Query 47917 AGTGACAGTCCAGACCTAGGAGCTATTCTACCATAGCA 47954 | || | ||| | ||||||| ||| |||||||| Sbjct 80269 GCAGCCAAGCTAGAACATGGAGCTACTCTCCCATAGCA 80306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717755210872920