Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 241 1e-58
seq36034 176 4e-39
seq25410 132 5e-26
seq549 120 3e-22
seq41499 98.7 1e-15
>seq1525
Length=329219
Score = 241 bits (266), Expect = 1e-58
Identities = 500/735 (68%), Gaps = 10/735 (1%)
Strand=Plus/Minus
Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631
|| ||||| | ||||| || | ||||| || |||||||||||||| || |||||||||
Sbjct 305175 ACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 305116
Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGA-CATAAACACTTTATCACAACCTAG 13690
|| ||||| |||||||| |||||||||||| | || ||| ||| | | |||| ||
Sbjct 305115 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAA-AACCCAG 305057
Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750
|| | | | ||| || || | || | || || || ||| ||| ||||||||||
Sbjct 305056 CTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCAT 304997
Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC-CT 13809
|| || || || || | | || | || | ||||| || || ||
Sbjct 304996 CCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCACT 304937
Query 13810 --CTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867
| |||| | ||| | ||| | ||||| | | || ||||| || ||
Sbjct 304936 GACGATTATT-TCTTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACAT 304880
Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927
| || ||||| ||||| || | ||||| ||||| ||||||||||| || ||||||||
Sbjct 304879 CAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGT 304820
Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987
| || ||||||| ||||||||| || | ||| ||||| | ||||| || || |||||
Sbjct 304819 GAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAA 304760
Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047
||| || || || ||||| ||||| ||||| | ||||||||| ||| || | | |||
Sbjct 304759 GAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTC 304700
Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107
| ||||| ||||| || | || || || | | || |||||| ||||| ||
Sbjct 304699 CTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGC 304640
Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167
|| || | | ||||| | ||||| | | | || ||| || ||| | || | |||||
Sbjct 304639 GTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATA 304580
Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCG 14226
|||||| || |||||||||||||| || || || || ||||| ||| || | |||||||
Sbjct 304579 CATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCA-CGGGCTTCCG 304521
Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286
| || |||| | || | || ||| |||||||| |||| |||||||| |
Sbjct 304520 TCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTG 304461
Query 14287 CTGCAAAAAATGCCA 14301
||||| | || ||||
Sbjct 304460 CTGCAGAGAAAGCCA 304446
>seq36034
Length=1448
Score = 176 bits (194), Expect = 4e-39
Identities = 379/566 (67%), Gaps = 3/566 (1%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || | ||| | ||||| || | ||||| || ||| |||||||||| || |||
Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685
|||||||| ||||| ||||||| |||||||||||| | | || || || | ||
Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446
Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745
|| || || | | | ||| || || | ||| || || || || ||| ||| |||
Sbjct 445 CCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAA 386
Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805
||||| || || || || || || | | || | || || | |||||| ||
Sbjct 385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 326
Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865
|| | || || | | | ||| | ||||| | | || ||||| ||
Sbjct 325 GCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 266
Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925
|| | || ||||| ||||| || | ||||| ||||| ||||||||||| || ||||||
Sbjct 265 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 206
Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985
|| | | ||||||| ||||||||||| | ||| ||||| | ||||| || || |||
Sbjct 205 GTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 146
Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045
||| ||||| || |||||| |||| ||| | ||||||||| ||| || | ||||
Sbjct 145 AAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTG 89
Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105
| | ||||| ||||| || | || || || | | || |||||| ||||||
Sbjct 88 TCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATA 29
Query 14106 GCATTAAATAAATATTCCTTCTCTTT 14131
|| || || | | ||||| | |||||
Sbjct 28 GCGTTGAAGAGAAATTCCCTTTCTTT 3
>seq25410
Length=10104
Score = 132 bits (146), Expect = 5e-26
Identities = 228/326 (70%), Gaps = 4/326 (1%)
Strand=Plus/Minus
Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222
|||||||||||||| || ||||||||||| || || || || ||||| || || |||
Sbjct 10099 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGCT 10040
Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282
|||| || ||||| | ||| | || |||| ||||||| ||||| ||||||
Sbjct 10039 TCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATCA 9980
Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342
|| |||||||| || |||| | | ||| || ||| ||| ||| || || |
Sbjct 9979 CTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 9920
Query 14343 TTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401
| ||| | | || | ||||| ||||| || || || ||| |||||||||| ||| |
Sbjct 9919 TCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTC 9861
Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGA 14461
|||||| |||||||| ||| || || | ||| |||||||| | ||||| | |
Sbjct 9860 AGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA-GTGGC 9802
Query 14462 AGATG-TTTCTTTAAGAATTGGTTCC 14486
| || ||||||| |||| |||||||
Sbjct 9801 GGGTGTTTTCTTTCAGAAGTGGTTCC 9776
>seq549
Length=511996
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||
Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || || |||||||| ||||| || ||||| ||||| |
Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||||||
Sbjct 260575 CTACGACACGTTCTCC 260590
>seq41499
Length=968
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || |||
Sbjct 919 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 860
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685
|||||||| ||||| |||||||| |||||||||||| | | || || || | ||
Sbjct 859 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 800
Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745
|| || || | | | ||| || || | || || || || || ||| ||| |||
Sbjct 799 CCCAGCTCCAGCATAAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCAA 740
Query 13746 TTCATACCTATTAGTTTTACAGG 13768
||||| || || || || || ||
Sbjct 739 TTCATCCCAATGAGCTTCACTGG 717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479384976490200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |