Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1525 241 1e-58 seq36034 176 4e-39 seq25410 132 5e-26 seq549 120 3e-22 seq41499 98.7 1e-15 >seq1525 Length=329219 Score = 241 bits (266), Expect = 1e-58 Identities = 500/735 (68%), Gaps = 10/735 (1%) Strand=Plus/Minus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || ||||| | ||||| || | ||||| || |||||||||||||| || ||||||||| Sbjct 305175 ACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 305116 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGA-CATAAACACTTTATCACAACCTAG 13690 || ||||| |||||||| |||||||||||| | || ||| ||| | | |||| || Sbjct 305115 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAA-AACCCAG 305057 Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 || | | | ||| || || | || | || || || ||| ||| |||||||||| Sbjct 305056 CTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCAT 304997 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGC-CT 13809 || || || || || | | || | || | ||||| || || || Sbjct 304996 CCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCACT 304937 Query 13810 --CTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 | |||| | ||| | ||| | ||||| | | || ||||| || || Sbjct 304936 GACGATTATT-TCTTTG--ACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACAT 304880 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 | || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||||| Sbjct 304879 CAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGT 304820 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 | || ||||||| ||||||||| || | ||| ||||| | ||||| || || ||||| Sbjct 304819 GAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAA 304760 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || || ||||| ||||| ||||| | ||||||||| ||| || | | ||| Sbjct 304759 GAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTC 304700 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | ||||| ||||| || | || || || | | || |||||| ||||| || Sbjct 304699 CTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGC 304640 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || || | | ||||| | ||||| | | | || ||| || ||| | || | ||||| Sbjct 304639 GTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATA 304580 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCCG 14226 |||||| || |||||||||||||| || || || || ||||| ||| || | ||||||| Sbjct 304579 CATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCA-CGGGCTTCCG 304521 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 | || |||| | || | || ||| |||||||| |||| |||||||| | Sbjct 304520 TCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTG 304461 Query 14287 CTGCAAAAAATGCCA 14301 ||||| | || |||| Sbjct 304460 CTGCAGAGAAAGCCA 304446 >seq36034 Length=1448 Score = 176 bits (194), Expect = 4e-39 Identities = 379/566 (67%), Gaps = 3/566 (1%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || | ||| | ||||| || | ||||| || ||| |||||||||| || ||| Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| ||||||| |||||||||||| | | || || || | || Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | | ||| || || | ||| || || || || ||| ||| ||| Sbjct 445 CCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAA 386 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || || || | | || | || || | |||||| || Sbjct 385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 326 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865 || | || || | | | ||| | ||||| | | || ||||| || Sbjct 325 GCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 266 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 || | || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||| Sbjct 265 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 206 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 || | | ||||||| ||||||||||| | ||| ||||| | ||||| || || ||| Sbjct 205 GTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 146 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||| ||||| || |||||| |||| ||| | ||||||||| ||| || | |||| Sbjct 145 AAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTG 89 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | | ||||| ||||| || | || || || | | || |||||| |||||| Sbjct 88 TCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATA 29 Query 14106 GCATTAAATAAATATTCCTTCTCTTT 14131 || || || | | ||||| | ||||| Sbjct 28 GCGTTGAAGAGAAATTCCCTTTCTTT 3 >seq25410 Length=10104 Score = 132 bits (146), Expect = 5e-26 Identities = 228/326 (70%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 |||||||||||||| || ||||||||||| || || || || ||||| || || ||| Sbjct 10099 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGCT 10040 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 |||| || ||||| | ||| | || |||| ||||||| ||||| |||||| Sbjct 10039 TCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATCA 9980 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 || |||||||| || |||| | | ||| || ||| ||| ||| || || | Sbjct 9979 CTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 9920 Query 14343 TTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 | ||| | | || | ||||| ||||| || || || ||| |||||||||| ||| | Sbjct 9919 TCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTC 9861 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGA 14461 |||||| |||||||| ||| || || | ||| |||||||| | ||||| | | Sbjct 9860 AGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA-GTGGC 9802 Query 14462 AGATG-TTTCTTTAAGAATTGGTTCC 14486 | || ||||||| |||| ||||||| Sbjct 9801 GGGTGTTTTCTTTCAGAAGTGGTTCC 9776 >seq549 Length=511996 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 260575 CTACGACACGTTCTCC 260590 >seq41499 Length=968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 919 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 860 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| |||||||| |||||||||||| | | || || || | || Sbjct 859 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 800 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | | | ||| || || | || || || || || ||| ||| ||| Sbjct 799 CCCAGCTCCAGCATAAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCAA 740 Query 13746 TTCATACCTATTAGTTTTACAGG 13768 ||||| || || || || || || Sbjct 739 TTCATCCCAATGAGCTTCACTGG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479384976490200