Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1525 206 3e-48 seq36034 149 6e-31 seq25410 122 8e-23 seq549 114 1e-20 seq41499 89.7 5e-13 >seq1525 Length=329219 Score = 206 bits (228), Expect = 3e-48 Identities = 490/734 (67%), Gaps = 8/734 (1%) Strand=Plus/Minus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 || ||||| | ||||| || | ||||| || ||||| |||||||| || ||||||||| Sbjct 305175 ACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 305116 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGA-CATAAACACTTTATCACAACCTAG 13478 || ||||| |||||||| || ||||||||| | || ||| ||| | | |||| || Sbjct 305115 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAA-AACCCAG 305057 Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 || | | | ||| || || | || | || || || ||| ||| |||||||||| Sbjct 305056 CTCCAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCAT 304997 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGC-CT 13597 || || || || || | | || | || | ||||| || || || Sbjct 304996 CCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCACT 304937 Query 13598 --CGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13655 || |||| | | | | | | | | ||||| | | || ||||| || || Sbjct 304936 GACGATTAT--TTCTTTGACTC-TCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACAT 304880 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 | || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||||| Sbjct 304879 CAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGT 304820 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 | || ||||||| ||||||||| || | ||| ||||| | || || || || ||||| Sbjct 304819 GAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAA 304760 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||| || || || ||||| ||||| ||||| | ||||||||| ||| || | | ||| Sbjct 304759 GAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTC 304700 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| ||||| || | || || || | | || |||||| || || || Sbjct 304699 CTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGC 304640 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 ||||| | | |||| | ||||| | | | || ||| || ||| | || | ||||| Sbjct 304639 GTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATA 304580 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 |||||| || ||||||||||| || || || || || ||||| ||| | ||||| | Sbjct 304579 CATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGT 304520 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 | || | || | || | || ||| ||||||||| || | |||||||| || Sbjct 304519 CATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGC 304460 Query 14076 TGCAAAAAATGCCA 14089 |||| | || |||| Sbjct 304459 TGCAGAGAAAGCCA 304446 >seq36034 Length=1448 Score = 149 bits (164), Expect = 6e-31 Identities = 373/566 (66%), Gaps = 3/566 (1%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || | ||| | ||||| || | ||||| || ||| | |||||||| || ||| Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| ||||||| || ||||||||| | | || || || | || Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | | ||| || || | ||| || || || || ||| ||| ||| Sbjct 445 CCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAA 386 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || || || | | || | || || | |||||| || Sbjct 385 TTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 326 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | | || || || | | | | ||||| | | || ||||| || Sbjct 325 GCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAAC 266 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || | || ||||| ||||| || | ||||| ||||| ||||||||||| || |||||| Sbjct 265 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAAT 206 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || | | ||||||| ||||||||||| | ||| ||||| | || || || || ||| Sbjct 205 GTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 146 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||| ||||| || |||||| |||| ||| | ||||||||| ||| || | |||| Sbjct 145 AAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTG 89 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 | ||||| ||||| || | || || || | | || |||||| || || Sbjct 88 TCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATA 29 Query 13894 GCATTGAATAAATGTTCCTTCTCTTT 13919 || ||||| | | |||| | ||||| Sbjct 28 GCGTTGAAGAGAAATTCCCTTTCTTT 3 >seq25410 Length=10104 Score = 122 bits (134), Expect = 8e-23 Identities = 226/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 |||||||||||||| || |||||||| || || || || || ||||| ||||| ||| Sbjct 10099 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGCT 10040 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 || | || || || | ||| | || ||||| ||||||| || || |||||| Sbjct 10039 TCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATCA 9980 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 || |||||||| || |||| | | ||| || ||| ||| ||| || || | Sbjct 9979 CTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCT 9920 Query 14131 TTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 | ||| | ||| || ||||| ||||| || || || ||| |||||||||| ||| Sbjct 9919 TCCCAGT--GCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862 Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14248 ||||||| |||||||| ||| || || | ||| |||||||| | ||||| | | Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA-GTGG 9803 Query 14249 AAGATG-TTTCTTTAAGAATTGGCTCC 14274 | || ||||||| |||| ||| ||| Sbjct 9802 CGGGTGTTTTCTTTCAGAAGTGGTTCC 9776 >seq549 Length=511996 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||| Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 260575 CTACGACACGTTCTCC 260590 >seq41499 Length=968 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 919 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 860 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| |||||||| || ||||||||| | | || || || | || Sbjct 859 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 800 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | | | ||| || || | || || || || || ||| ||| ||| Sbjct 799 CCCAGCTCCAGCATAAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCAA 740 Query 13534 TTCATACCTATTAGTTTTACAGG 13556 ||||| || || || || || || Sbjct 739 TTCATCCCAATGAGCTTCACTGG 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478246591060920