Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 304 2e-77
seq36034 194 2e-44
seq25410 150 2e-31
seq3603 141 1e-28
seq549 132 6e-26
seq1670 107 3e-18
seq7076 102 1e-16
seq27717 98.7 1e-15
>seq1525
Length=329219
Score = 304 bits (336), Expect = 2e-77
Identities = 541/787 (69%), Gaps = 8/787 (1%)
Strand=Plus/Minus
Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775
||| |||||| |||| || | ||| ||| ||| || |||| |||||||| |
Sbjct 305224 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACAKCACTCCCATCYT 305165
Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835
|| || || || || | || || || || |||||||| ||||||| ||| ||||| ||
Sbjct 305164 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 305105
Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895
||| || ||||| ||||| || ||| || |||| |||| || || |
Sbjct 305104 CATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 305045
Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955
||| ||||| | ||||| || || ||||||| |||||||||| || || || ||
Sbjct 305044 TCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCATCCCGATGAGCTT 304985
Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT-ATAATAG 42014
|||| ||| | || || || ||||| | || || ||| || ||
Sbjct 304984 CACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCA-CTGACGATTATTT 304926
Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074
| | ||| | | || ||| | | | ||||| ||||||| || || || |
Sbjct 304925 CTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGT 304866
Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134
| ||||| | |||||| ||||| ||||| | ||| |||||||| ||||| |||||||| |
Sbjct 304865 CACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCA 304806
Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194
| || || || || ||||| ||||| || ||||| || |||||||||||||| ||||| |
Sbjct 304805 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 304746
Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 42251
|||| |||||||| || | | |||||||| | | | |||| | |||||
Sbjct 304745 CTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCAGCGCA 304686
Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311
|||||||| |||||||| |||||||||||||| || || ||||| || |||||| | |
Sbjct 304685 AGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAGATT 304626
Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371
|||| || ||||||||| || || || | | |||||||||||||| ||||| |
Sbjct 304625 CCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATACATTTCCGAATGTA 304566
Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431
||||||| ||||| || || || || |||||| | ||| || || | ||| |||||
Sbjct 304565 TGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGTCATCTGAGCTTCTT 304506
Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491
| || || || | | ||||| || |||| || ||||| |||||| | || ||||
Sbjct 304505 GGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAGCCA 304446
Query 42492 ATACATG 42498
|||||
Sbjct 304445 GGACATG 304439
>seq36034
Length=1448
Score = 194 bits (214), Expect = 2e-44
Identities = 401/595 (67%), Gaps = 9/595 (2%)
Strand=Plus/Minus
Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTT 41775
||| |||||| |||| || | ||| ||| ||| || ||||| |||| ||| |
Sbjct 608 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCTCATCCT 549
Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835
|| || || || || | || || | || |||||||| ||||||| ||| ||||| |
Sbjct 548 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCCC 489
Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895
||| || ||||| ||||| || | ||| || |||| |||| || || |
Sbjct 488 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 429
Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955
||| ||||| | ||||| || || ||||||| |||||||| || || || ||
Sbjct 428 TCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 369
Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015
||||| || ||| | || || || || ||||| || || || | || ||
Sbjct 368 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 309
Query 42016 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 42075
| | ||| | | || ||| | | | ||||| ||||||| || || || ||
Sbjct 308 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 249
Query 42076 GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 42135
||||| | |||||| ||||| ||||| | ||| |||||||| ||||| | |||||| ||
Sbjct 248 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCTGGGCATCAG 189
Query 42136 GCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTAC 42195
|| || ||||| ||||| ||||| || ||||| || |||||||||| ||||||| ||
Sbjct 188 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA---TTCCTTCCAC 132
Query 42196 TGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTG 42252
||| ||||||| | | |||||||| | | | |||| |||||
Sbjct 131 TGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCACAA 72
Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307
|||||||| | |||||| |||||||||||||| || || || || || ||||||
Sbjct 71 GGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGA 17
>seq25410
Length=10104
Score = 150 bits (166), Expect = 2e-31
Identities = 211/296 (71%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409
|||||||||||||| ||||| |||||||| ||||| || || || || |||||||| |
Sbjct 10102 AGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGG 10043
Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469
|| || |||| ||| |||||| | ||| || || | || |||| || ||||| ||
Sbjct 10042 GCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCA 9983
Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT 42529
||||| |||||||| || |||| ||||| || |||||| | || || || | |
Sbjct 9982 TCACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGG 9923
Query 42530 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589
| ||| | | || || || || | || || ||||| | |||||||| || ||
Sbjct 9922 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCC 9863
Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
|| || || |||||||| | ||| |||||||| |||| || || || || |||||
Sbjct 9862 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807
>seq3603
Length=202440
Score = 141 bits (156), Expect = 1e-28
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | |
Sbjct 28560 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28501
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || |
Sbjct 28500 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 28441
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 28440 CTGTTTCTTATACCAT 28425
Score = 104 bits (114), Expect = 3e-17
Identities = 126/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| || | | | ||| |||||||| || || || || |||||||
Sbjct 24207 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 24148
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||||||||| || |||| |||||| | || || ||||| || ||||| || |
Sbjct 24147 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 24088
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552
| | | |||||||| || ||||| | ||||| || ||||| || || ||
Sbjct 24087 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 24036
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| |||||||| ||||||||||| || | || || || |||| | |||
Sbjct 19857 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 19798
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||
Sbjct 19797 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 19738
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 19737 TCCAGGTAAATAGC 19724
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
||||| | ||| | || | || || ||||| || | || ||||| || || ||||||
Sbjct 3666 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAAC 3607
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516
|| || ||||| || || ||||| || || ||||| | || ||||| || || ||
Sbjct 3606 CACTTCTCAGAAAGAAGGTTGTATGTTTCTATAGCAGCATCAATATCTTCTTTGTGAATG 3547
Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555
|| || | || | ||| ||||||||||| |||||||||
Sbjct 3546 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 3508
>seq549
Length=511996
Score = 132 bits (146), Expect = 6e-26
Identities = 102/121 (84%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| ||||| | ||| |||||||| ||||| |||||||| || || || ||||
Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || |||||||||||||||||||| ||||| |||||||
Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574
Query 42207 C 42207
|
Sbjct 260575 C 260575
Score = 93.3 bits (102), Expect = 6e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| || || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 262451 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 262510
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| || || || |||||||| | ||| || |||| ||| ||||||
Sbjct 262511 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 262556
>seq1670
Length=315515
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | ||| |||||||| || ||||| ||||| || || | || ||
Sbjct 206376 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 206435
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct 206436 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 206494
>seq7076
Length=122421
Score = 102 bits (112), Expect = 1e-16
Identities = 176/255 (69%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857
|||||| || ||||| ||| | || || || || ||||| | ||| ||||| ||
Sbjct 32540 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 32481
Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917
| |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || ||
Sbjct 32480 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTGAC 32421
Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977
| || | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 32420 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 32361
Query 39978 GTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGC 40034
||||| ||||| |||||| ||| || |||| | || ||||| | |||||
Sbjct 32360 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 32301
Query 40035 TATTCTACCATAGCA 40049
|| ||| ||||||||
Sbjct 32300 TACTCTCCCATAGCA 32286
>seq27717
Length=6327
Score = 98.7 bits (108), Expect = 1e-15
Identities = 175/255 (69%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857
|||||| || ||||| ||| | || || || || ||||| | ||| ||||| ||
Sbjct 4398 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 4339
Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917
| |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || ||
Sbjct 4338 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTGAC 4279
Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977
| || | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 4278 TTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 4219
Query 39978 GTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGC 40034
|||| ||||| |||||| ||| || |||| | || ||||| | |||||
Sbjct 4218 ATCTACGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 4159
Query 40035 TATTCTACCATAGCA 40049
|| ||| ||||||||
Sbjct 4158 TACTCTCCCATAGCA 4144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670659310304280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |