Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18172 176 7e-39 seq1525 122 1e-22 seq36034 98.7 1e-15 >seq18172 Length=33122 Score = 176 bits (194), Expect = 7e-39 Identities = 487/737 (66%), Gaps = 17/737 (2%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| |||| ||||| ||| || |||||| || |||||| | ||||| | Sbjct 26867 CCTCTGCTGACAACCAAATGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTGCTGTGGTTT 26926 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 || ||||| || || || || |||||| ||||| || | || ||| | | Sbjct 26927 ATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCC 26986 Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075 || | ||| | | ||||| || || ||| || |||| ||| || ||| | Sbjct 26987 AATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAAGGGGATTTA 27046 Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA-CTGCGAGAC 70134 || ||||| || || || ||||||||||| | || ||| | || ||| ||| | | Sbjct 27047 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGACCGAATACAAAGATATGC-ATTC 27105 Query 70135 AGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAA 70194 ||| ||||| | ||| || || |||||| |||| | | | | |||||| |||| ||||| Sbjct 27106 AGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATCAAAACCAA 27165 Query 70195 TCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGC 70254 || || || || ||| | |||| | |||||||| |||| | | | ||||| Sbjct 27166 CCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCGAAAGATCTCCCTCTCATGGC 27225 Query 70255 ACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGT--ACGATGGCAAATTGTCAT 70310 ||||| ||||| ||| || || ||||| ||| | || ||| || | |||| | Sbjct 27226 CCTACCCCCGTGCCACGCCCTTTGC-CAGTTCTACGTGGTGAACGGTG---AGCTGTCCT 27281 Query 70311 GCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCT 70370 || |||| |||||| | ||||||||||| |||| ||||| | ||| || |||| Sbjct 27282 GCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGRGTGTGCCCTTCARCATCGCCAGCT 27341 Query 70371 ATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTAC 70430 | | || | ||||||| || |||| || ||||||| | || || |||| Sbjct 27342 ACGCCCTGCT-----ACATGATCGCACACACCACGCGCCTGAAGCCAGGTGACTTTGTAC 27396 Query 70431 ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCG 70490 |||| | || || || ||| | || | |||||||| ||||| | || | || || Sbjct 27397 ACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCGCTGAAAATTCAGCTTC 27456 Query 70491 AACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGC-TCGTAAAGTTGAAAATATTGAC 70549 | || || || || ||||| |||||||| || | | ||| |||||||| || ||||| Sbjct 27457 AGCGAGAACCAAGGCCTTTCCCCAAGCT-CAGAATCCTTCGAAAAGTTGAGAAAATTGAT 27515 Query 70550 AGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATG 70609 || ||| ||||| ||| || |||| ||| |||| |||| | ||| ||| Sbjct 27516 GACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAAATG 27575 Query 70610 GTTCTGGCTGTTTAGAG 70626 | ||||||||||||| Sbjct 27576 GAAATGGCTGTTTAGAG 27592 >seq1525 Length=329219 Score = 122 bits (134), Expect = 1e-22 Identities = 242/351 (69%), Gaps = 13/351 (4%) Strand=Plus/Plus Query 125230 CGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 |||| ||| || || |||||||| || || ||| | || ||||||||||| | Sbjct 304529 CGTGATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGAAATGTATAGTCTC 304588 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGA 125347 || | ||||| ||| || ||| | ||| | || || ||||| ||||| || || Sbjct 304589 CTCAATGACACTTACGTTAAAGATTC-CAAAGAAAGGGAATCTCTCTTCAACGCCATTGA 304647 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA- 125406 || |||| | | || || ||||| | |||| | || |||||||| ||| ||| Sbjct 304648 GACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGAC-ACAG 304706 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 || || |||| | || | | | || || ||||| || || |||||||||||||| | Sbjct 304707 AGGCTACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTG 304766 Query 125467 GTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 || |||||| | || || ||||||||||| || ||||| |||||||| || |||| Sbjct 304767 GTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCT----CACA 304822 Query 125527 GT----AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || || |||| |||||||||| ||||||||||||||||| Sbjct 304823 TTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCC 304873 >seq36034 Length=1448 Score = 98.7 bits (108), Expect = 1e-15 Identities = 273/416 (66%), Gaps = 17/416 (4%) Strand=Plus/Plus Query 125458 TCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGAC 125517 ||||||| ||| |||||| | || || |||||||| || || || || |||||| | | Sbjct 142 TCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCTGATGCCCAGCC 201 Query 125518 TGACGCACAGT----AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||| | || || |||| |||||||||| ||||||||||||||||| Sbjct 202 T----CACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCC 257 Query 125574 ATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC 125633 || |||| ||| | |||| | | | | | | | | || | |||| Sbjct 258 TGCCTGATGTT---CAAACACCTGCTACACAA----ACCTTCGGAGCAGAGA--GTCAAA 308 Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693 | || | | |||| || ||||||||||| ||||| || || || |||| || || Sbjct 309 GAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCAGTG 368 Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753 | | ||||| ||||| |||| | ||| ||||||| || ||||||||||| | Sbjct 369 AAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAATTTGTGGCAGACAGA 428 Query 125754 CTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATG 125813 || || ||| || | ||||| ||| || | | ||||| ||||| || ||| Sbjct 429 CTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATG 488 Query 125814 ACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || ||||| || || ||||| ||||| | ||||||| || ||||||| Sbjct 489 GGGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTA 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740529314882280