Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 176 7e-39
seq1525 122 1e-22
seq36034 98.7 1e-15
>seq18172
Length=33122
Score = 176 bits (194), Expect = 7e-39
Identities = 487/737 (66%), Gaps = 17/737 (2%)
Strand=Plus/Plus
Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955
|||||| |||| ||||| ||| || |||||| || |||||| | ||||| |
Sbjct 26867 CCTCTGCTGACAACCAAATGTGTTTTCTGCAAGGGTGTTTCGGAGGAGTTGCTGTGGTTT 26926
Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015
|| ||||| || || || || |||||| ||||| || | || ||| | |
Sbjct 26927 ATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCC 26986
Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075
|| | ||| | | ||||| || || ||| || |||| ||| || ||| |
Sbjct 26987 AATGGGTCCCGAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGCAGAAGGGGATTTA 27046
Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA-CTGCGAGAC 70134
|| ||||| || || || ||||||||||| | || ||| | || ||| ||| | |
Sbjct 27047 GGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGACCGAATACAAAGATATGC-ATTC 27105
Query 70135 AGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAA 70194
||| ||||| | ||| || || |||||| |||| | | | | |||||| |||| |||||
Sbjct 27106 AGATTATTCAGATCAAGGAGTAGATCAACTGCAAAAAGTGACTGACACAATCAAAACCAA 27165
Query 70195 TCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGC 70254
|| || || || ||| | |||| | |||||||| |||| | | | |||||
Sbjct 27166 CCCTGACGACAGAAGAATCATCCTGTGTGCTTGGAATCCGAAAGATCTCCCTCTCATGGC 27225
Query 70255 ACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGT--ACGATGGCAAATTGTCAT 70310
||||| ||||| ||| || || ||||| ||| | || ||| || | |||| |
Sbjct 27226 CCTACCCCCGTGCCACGCCCTTTGC-CAGTTCTACGTGGTGAACGGTG---AGCTGTCCT 27281
Query 70311 GCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCT 70370
|| |||| |||||| | ||||||||||| |||| ||||| | ||| || ||||
Sbjct 27282 GCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGRGTGTGCCCTTCARCATCGCCAGCT 27341
Query 70371 ATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTAC 70430
| | || | ||||||| || |||| || ||||||| | || || ||||
Sbjct 27342 ACGCCCTGCT-----ACATGATCGCACACACCACGCGCCTGAAGCCAGGTGACTTTGTAC 27396
Query 70431 ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCG 70490
|||| | || || || ||| | || | |||||||| ||||| | || | || ||
Sbjct 27397 ACACTTTGGGAGATGCACACATTTACCTGAATCACATTGAGCCGCTGAAAATTCAGCTTC 27456
Query 70491 AACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGC-TCGTAAAGTTGAAAATATTGAC 70549
| || || || || ||||| |||||||| || | | ||| |||||||| || |||||
Sbjct 27457 AGCGAGAACCAAGGCCTTTCCCCAAGCT-CAGAATCCTTCGAAAAGTTGAGAAAATTGAT 27515
Query 70550 AGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATG 70609
|| ||| ||||| ||| || |||| ||| |||| |||| | ||| |||
Sbjct 27516 GACTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCACCCGACTATTAAAATG 27575
Query 70610 GTTCTGGCTGTTTAGAG 70626
| |||||||||||||
Sbjct 27576 GAAATGGCTGTTTAGAG 27592
>seq1525
Length=329219
Score = 122 bits (134), Expect = 1e-22
Identities = 242/351 (69%), Gaps = 13/351 (4%)
Strand=Plus/Plus
Query 125230 CGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288
|||| ||| || || |||||||| || || ||| | || ||||||||||| |
Sbjct 304529 CGTGATTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCGGAAATGTATAGTCTC 304588
Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGA 125347
|| | ||||| ||| || ||| | ||| | || || ||||| ||||| || ||
Sbjct 304589 CTCAATGACACTTACGTTAAAGATTC-CAAAGAAAGGGAATCTCTCTTCAACGCCATTGA 304647
Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA- 125406
|| |||| | | || || ||||| | |||| | || |||||||| ||| |||
Sbjct 304648 GACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATCGAGGAC-ACAG 304706
Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466
|| || |||| | || | | | || || ||||| || || |||||||||||||| |
Sbjct 304707 AGGCTACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTG 304766
Query 125467 GTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526
|| |||||| | || || ||||||||||| || ||||| |||||||| || ||||
Sbjct 304767 GTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCT----CACA 304822
Query 125527 GT----AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
| || || |||| |||||||||| |||||||||||||||||
Sbjct 304823 TTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCC 304873
>seq36034
Length=1448
Score = 98.7 bits (108), Expect = 1e-15
Identities = 273/416 (66%), Gaps = 17/416 (4%)
Strand=Plus/Plus
Query 125458 TCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGAC 125517
||||||| ||| |||||| | || || |||||||| || || || || |||||| | |
Sbjct 142 TCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCTGATGCCCAGCC 201
Query 125518 TGACGCACAGT----AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
| |||| | || || |||| |||||||||| |||||||||||||||||
Sbjct 202 T----CACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTTTGCC 257
Query 125574 ATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC 125633
|| |||| ||| | |||| | | | | | | | | || | ||||
Sbjct 258 TGCCTGATGTT---CAAACACCTGCTACACAA----ACCTTCGGAGCAGAGA--GTCAAA 308
Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693
| || | | |||| || ||||||||||| ||||| || || || |||| || ||
Sbjct 309 GAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCAGTG 368
Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753
| | ||||| ||||| |||| | ||| ||||||| || ||||||||||| |
Sbjct 369 AAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATCGAATTTGTGGCAGACAGA 428
Query 125754 CTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATG 125813
|| || ||| || | ||||| ||| || | | ||||| ||||| || |||
Sbjct 429 CTTATGCTGGAGCTGGGTTTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATG 488
Query 125814 ACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869
| || ||||| || || ||||| ||||| | ||||||| || |||||||
Sbjct 489 GGGAATATTTCACTGGAAGGGAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGTA 544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740529314882280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |