Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1525 212 5e-50 seq36034 172 5e-38 seq1670 114 1e-20 seq25410 113 4e-20 seq549 105 6e-18 >seq1525 Length=329219 Score = 212 bits (234), Expect = 5e-50 Identities = 482/726 (66%), Gaps = 0/726 (0%) Strand=Plus/Minus Query 12856 CATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAAT 12915 ||| | ||||| |||| ||||| || ||||| ||||| || || ||||| | ||||| Sbjct 305170 CATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 305111 Query 12916 ATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAG 12975 ||| |||||||| || || ||||||| || | || || | || | || || Sbjct 305110 ATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAACCCAGCTCCAG 305051 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 | | |||||| || | || | |||||||| ||||| ||| |||| ||||| || || Sbjct 305050 CATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCATCCCGAT 304991 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | || || | || || || | | | ||||| |||||| || | Sbjct 304990 GAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCACTGACGAT 304931 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 ||| ||| | | | | ||| | || | | || || || ||||||| || || Sbjct 304930 TATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGC 304871 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| |||||||| || || || ||||| || || || || || |||||||| || || || Sbjct 304870 AAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGG 304811 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 ||| || |||||||| || | ||| ||||| | ||||| ||||| ||||| || || || Sbjct 304810 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 304751 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 ||| ||||| ||||| ||||| | | ||| ||||||||| | | | ||| ||||| Sbjct 304750 TTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCA 304691 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 |||||| | ||| || | || || || ||| | || || ||||| || | Sbjct 304690 GCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAG 304631 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 | | | |||| || ||| || ||||| || | | | ||||||||||| || Sbjct 304630 AGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATACATTTCCGA 304571 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||| || |||||||| || |||||||| ||||| ||| | || || | | |||| | Sbjct 304570 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGTCATCTGAGC 304511 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 ||| | || | || | | |||||| || |||| || ||||| || ||| | || Sbjct 304510 TTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAA 304451 Query 13576 aGCAAG 13581 ||| || Sbjct 304450 AGCCAG 304445 >seq36034 Length=1448 Score = 172 bits (190), Expect = 5e-38 Identities = 324/475 (68%), Gaps = 11/475 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| || ||| | ||||| |||| ||||| || ||| | ||||| || || ||| Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTT 12960 || | |||||||| ||||||| || || ||||||| || | || || | Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACC----TTGCT 450 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | | || | || || | | |||||| || ||||| || |||||||| ||||| ||| Sbjct 449 AAAACCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGT 390 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 || ||||| || || | || || |||| || || || | || | | |||||| Sbjct 389 GCAATTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCT 330 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 |||||| | || | ||| ||| | | | | ||| | || | | || || || Sbjct 329 AACTGCATTGACGATTATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTT 270 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 ||||||| || ||||| |||||||| || || || ||||| || || || || || || Sbjct 269 GAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGA 210 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 |||||| || | ||||| || ||||||||||| | ||| ||||| | ||||| ||||| Sbjct 209 AAATGTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACC 150 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 | |||| |||||||| ||||| |||| ||| | | ||| ||||||||| Sbjct 149 ---AGAAAAGATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTA 98 >seq1670 Length=315515 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 206374 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 206433 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 206434 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 206493 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 206494 CCACCACCCTTTCCCC 206509 >seq25410 Length=10104 Score = 113 bits (124), Expect = 4e-20 Identities = 199/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||||||||||| ||||| || |||||||| || |||||||| ||||| ||||| || Sbjct 10099 CTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGCT 10040 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | | ||||||||| | ||| | || | ||| |||| || ||||| || ||| Sbjct 10039 TCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATCA 9980 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAA 13617 || || ||||| ||||| || | ||| ||| || | | | || | ||| | Sbjct 9979 CTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTC--AGGG 9922 Query 13618 CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 ||| ||| | ||| || || || | || ||||| ||| | |||||||| ||||| Sbjct 9921 CTT--CCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGC 9864 Query 13678 AACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 |||| |||||||||||| ||| ||||| | || | || ||||| Sbjct 9863 CTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 9816 >seq549 Length=511996 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 || ||||| || || || || || |||||||| || || ||||| || ||||||||||| Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 260576 Query 13295 A 13295 | Sbjct 260577 A 260577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430681935636606