Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq18172 248 6e-61 seq15026 140 2e-28 seq293 100 2e-16 >seq18172 Length=33122 Score = 248 bits (274), Expect = 6e-61 Identities = 403/580 (69%), Gaps = 6/580 (1%) Strand=Plus/Minus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 |||| || || || || || | || |||||| | |||||||| || | ||||| ||||| Sbjct 27480 TGGGGAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGT 27421 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | ||| || ||||||| |||||| ||||| || || || | || | || || | Sbjct 27420 AAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTG 27361 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| | || ||||||||||||| | ||||| || | | ||||||| Sbjct 27360 CGATCATGTA-----GCAGGGCGTAGCTGGCGATGYTGAAGGGCACACYCAGGCCCATGT 27306 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | || ||||||||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 27305 CTCCT-GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAA 27247 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || || |||||| || || || || || | ||||| || ||||| || |||| | Sbjct 27246 AGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTCGGATTCCAAGCACACAGG 27187 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| || |||||| |||| || | |||||||| ||||| Sbjct 27186 ATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCT 27127 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || | || || |||| ||| || |||| || | || |||| ||||||| Sbjct 27126 ACTCCTTGATCTGAATAATCTGAATGCATATCTTTGTATTCGGTCCCAAAATGCCTCCAC 27067 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 || || || || || || |||| || || ||| | ||| || ||| | ||| Sbjct 27066 TGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCC 27007 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 || ||||||| ||| |||||||| |||||||| || || ||||| || ||||| || Sbjct 27006 AAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTA 26947 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCG 25966 | ||||||||| || ||| |||||||||| |||| ||| Sbjct 26946 GCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCG 26907 >seq15026 Length=49095 Score = 140 bits (154), Expect = 2e-28 Identities = 367/553 (66%), Gaps = 13/553 (2%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| | |||||| | || | |||||||||||| | ||| || ||||||| |||||| Sbjct 46639 AGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 46698 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 ||| | || || || | || || || | || || |||||||| ||||| || ||| Sbjct 46699 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAG 46758 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||| ||| |||| || || | ||| ||| | || ||||||||||| ||||| || Sbjct 46759 CTGGCGACGTTGAAGGACACACCCAGGCCCCTGT-CTCCTGACCTCTGGTACAGCTG-CA 46816 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAG------ 25646 || ||||| | || |||||| || || || | || | |||| | || || Sbjct 46817 GGACAGCTCATGGTTCACCACGTAGAAGTGGCAAAAGGCATGGCACAGGGGCAGGGTGGC 46876 Query 25647 -AGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTG 25705 | ||| || | ||||| | ||||| || || | ||||| | |||||||| | Sbjct 46877 AGGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAG 46935 Query 25706 GGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA-G 25764 ||||| |||| || |||||||| || || || || | || || Sbjct 46936 GGTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACGTGAATACA 46995 Query 25765 TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGT 25824 | | || || |||| || || | ||| ||||||||| || | || || || Sbjct 46996 TTTAAATCCACATCTTTGTATTCAGCCACCAAAGGCCTCCACTGAAAGCTATAAACTGGG 47055 Query 25825 CCTAGGTCTCCATCTTCCCTGTGCTCAAAG-CCCCTCTTATCCAAAAAGTCTCTGGAACC 25883 |||| || || ||||| ||| | | || || | ||||| ||||||| ||| || Sbjct 47056 CCTAAATCCCCTTCTTCTCTG-GTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCC 47114 Query 25884 ATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 25943 | ||| |||||||| || || ||||| || ||||| || | |||||||| || | Sbjct 47115 GTGGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTT 47174 Query 25944 GACGAACCACAGC 25956 || ||||||||| Sbjct 47175 GATCAACCACAGC 47187 >seq293 Length=643942 Score = 100 bits (110), Expect = 2e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| ||||| || || | |||||| Sbjct 264043 GCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATG 263984 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| ||| || ||| ||||| || Sbjct 263983 T-CTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCATGTAGAACTGGCA 263925 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || |||||| || || || || || Sbjct 263924 AAGGGCGTGGCACGGGGGTAGGGCCATGAG 263895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339900469139319