Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq13180 87.8 9e-13 seq16349 86.0 3e-12 seq215 86.0 3e-12 seq151 86.0 3e-12 seq13018 82.4 4e-11 seq178 82.4 4e-11 >seq13180 Length=61179 Score = 87.8 bits (96), Expect = 9e-13 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 49552 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 49611 Query 11528 CCG-TCGAC 11535 ||| ||||| Sbjct 49612 CCGCTCGAC 49620 >seq16349 Length=41817 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 36118 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 36177 Query 11528 CCGTCGAC 11535 ||| |||| Sbjct 36178 CCG-CGAC 36184 >seq215 Length=702973 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 512019 TAAAAAACGACAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACC 511960 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 511959 ACGCTCTAACCAACTGAGCTAACCGGCC 511932 >seq151 Length=797873 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 511472 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 511531 Query 11515 CTGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 511532 CTGAGCTAACCGGCCG 511547 Score = 84.2 bits (92), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11449 ATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 |||| |||||| |||| |||||||||| | ||||| ||||||||||||| |||||| Sbjct 508412 ATCAGAATTGGACCATATGGGGATCGAACCCACAACCTTGGCGTTATTAGCACCACGCTC 508471 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | |||||||||||||| |||| Sbjct 508472 TAACCAACTGAGCTAACAGGCC 508493 >seq13018 Length=62299 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 31527 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31586 Query 11528 CC 11529 || Sbjct 31587 CC 31588 >seq178 Length=743899 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 630700 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 630641 Query 11528 CC 11529 || Sbjct 630640 CC 630639 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 680535 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 680594 Query 11528 CC 11529 || Sbjct 680595 CC 680596 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261308898386428