Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq13180 87.8 9e-13
seq16349 86.0 3e-12
seq215 86.0 3e-12
seq151 86.0 3e-12
seq13018 82.4 4e-11
seq178 82.4 4e-11
>seq13180
Length=61179
Score = 87.8 bits (96), Expect = 9e-13
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 49552 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 49611
Query 11528 CCG-TCGAC 11535
||| |||||
Sbjct 49612 CCGCTCGAC 49620
>seq16349
Length=41817
Score = 86.0 bits (94), Expect = 3e-12
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 36118 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 36177
Query 11528 CCGTCGAC 11535
||| ||||
Sbjct 36178 CCG-CGAC 36184
>seq215
Length=702973
Score = 86.0 bits (94), Expect = 3e-12
Identities = 72/88 (82%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 11443 TAAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
||||||| | || |||||| | |||||||||| ||||||| |||||||||||||
Sbjct 512019 TAAAAAACGACAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACC 511960
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 511959 ACGCTCTAACCAACTGAGCTAACCGGCC 511932
>seq151
Length=797873
Score = 86.0 bits (94), Expect = 3e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 511472 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 511531
Query 11515 CTGAGCTAATGGGCCG 11530
||||||||| |||||
Sbjct 511532 CTGAGCTAACCGGCCG 511547
Score = 84.2 bits (92), Expect = 1e-11
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 11449 ATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507
|||| |||||| |||| |||||||||| | ||||| ||||||||||||| ||||||
Sbjct 508412 ATCAGAATTGGACCATATGGGGATCGAACCCACAACCTTGGCGTTATTAGCACCACGCTC 508471
Query 11508 TRACCAACTGAGCTAATGGGCC 11529
| |||||||||||||| ||||
Sbjct 508472 TAACCAACTGAGCTAACAGGCC 508493
>seq13018
Length=62299
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 31527 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31586
Query 11528 CC 11529
||
Sbjct 31587 CC 31588
>seq178
Length=743899
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 630700 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 630641
Query 11528 CC 11529
||
Sbjct 630640 CC 630639
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 680535 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 680594
Query 11528 CC 11529
||
Sbjct 680595 CC 680596
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261308898386428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |