Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq7377 165 1e-35
seq869 107 3e-18
>seq7377
Length=118119
Score = 165 bits (182), Expect = 1e-35
Identities = 174/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| ||||| || || || |||||||||||| || |||| || ||||| ||||||
Sbjct 31714 GTCTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 31773
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||||| ||||| || || ||||||||||| ||||||||||| || |||||
Sbjct 31774 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 31833
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| || || || ||||| | |||| | ||| || || | || || |||||||| |
Sbjct 31834 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 31893
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| |||||||| || || |||| ||||
Sbjct 31894 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 31942
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| | | |||| | ||||| || || |||||| ||| ||| | ||
Sbjct 32762 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 32821
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 32822 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 32881
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | ||||| |||||||||||| | | | ||| || || |
Sbjct 32882 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 32941
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| | |||| || |||||
Sbjct 32942 TTTCCTCCCTGAAAAATGAGAA 32963
Score = 95.1 bits (104), Expect = 2e-14
Identities = 183/265 (69%), Gaps = 4/265 (2%)
Strand=Plus/Plus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
|| || |||||||| ||||| | ||||| ||||| || | ||| || | |||||| |
Sbjct 31147 CTCACCCGGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 31206
Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440
| || | ||| ||||| || | || || || |||| || | | ||||||||
Sbjct 31207 AGTAGGAGGGAGTTGTTATAGATAAA-TTGCTGATAGTTGTAGTGTTGGCCATCAATCTG 31265
Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500
||| | || |||| || | ||||||||| || | |||||||||| | | |||||
Sbjct 31266 AAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 31325
Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559
|||||||||||||| | | ||| ||||| || || | |||| || | ||||
Sbjct 31326 GTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 31384
Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584
| ||||| || || ||||| |||||
Sbjct 31385 GATAGCCACTCAGGTGCTGTACATA 31409
Score = 91.5 bits (100), Expect = 2e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || ||||| || || | ||| || ||||| |||| || | |
Sbjct 33370 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 33429
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||| || || || || |||||||||||| || |||||| | | || || |
Sbjct 33430 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 33489
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| ||||| ||||||| || ||||| |||||
Sbjct 33490 GGCGGGCTCTCAATCAGATGTGATCTCGCTGAA 33522
>seq869
Length=425044
Score = 107 bits (118), Expect = 3e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| |||| || ||||| || ||||| | |||||||| |||| || ||||| |||
Sbjct 408160 AAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTACTCCGGAGAACAGATAGGATTC 408101
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||| || |||||||| |||||||| | || | || ||||| || ||||||
Sbjct 408100 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 408041
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| ||| ||| || ||| || | | | || | ||| ||||||| || |||||||||
Sbjct 408040 GAGTTTGGAGGGCACTTCTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 407981
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || || || | || || || || ||||| ||||||
Sbjct 407980 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 407939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708018178198320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |