Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq7377 165 1e-35 seq869 107 3e-18 >seq7377 Length=118119 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| ||||| || || || |||||||||||| || |||| || ||||| |||||| Sbjct 31714 GTCTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 31773 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || ||||||||||| ||||||||||| || ||||| Sbjct 31774 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 31833 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | |||| | ||| || || | || || |||||||| | Sbjct 31834 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 31893 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || |||| |||| Sbjct 31894 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAATTATCT 31942 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| | | |||| | ||||| || || |||||| ||| ||| | || Sbjct 32762 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 32821 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 32822 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 32881 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| |||||||||||| | | | ||| || || | Sbjct 32882 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 32941 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| | |||| || ||||| Sbjct 32942 TTTCCTCCCTGAAAAATGAGAA 32963 Score = 95.1 bits (104), Expect = 2e-14 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 || || |||||||| ||||| | ||||| ||||| || | ||| || | |||||| | Sbjct 31147 CTCACCCGGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGAGGCCGTGTTCC 31206 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | || | ||| ||||| || | || || || |||| || | | |||||||| Sbjct 31207 AGTAGGAGGGAGTTGTTATAGATAAA-TTGCTGATAGTTGTAGTGTTGGCCATCAATCTG 31265 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 31266 AAAGGTGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCAATACG 31325 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 |||||||||||||| | | ||| ||||| || || | |||| || | |||| Sbjct 31326 GTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 31384 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || || ||||| ||||| Sbjct 31385 GATAGCCACTCAGGTGCTGTACATA 31409 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | ||| || ||||| |||| || | | Sbjct 33370 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 33429 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || || || || |||||||||||| || |||||| | | || || | Sbjct 33430 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGCACATTATAAGTT 33489 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||| ||||||| || ||||| ||||| Sbjct 33490 GGCGGGCTCTCAATCAGATGTGATCTCGCTGAA 33522 >seq869 Length=425044 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || ||||| || ||||| | |||||||| |||| || ||||| ||| Sbjct 408160 AAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTACTCCGGAGAACAGATAGGATTC 408101 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || |||||||| |||||||| | || | || ||||| || |||||| Sbjct 408100 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 408041 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | ||| ||||||| || ||||||||| Sbjct 408040 GAGTTTGGAGGGCACTTCTCAAGAAGCAGCCCTGGGTAGAACTCCAAGGCATCGATGTCT 407981 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | || || || || ||||| |||||| Sbjct 407980 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 407939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708018178198320