Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq18093 116 3e-21 seq7076 100 3e-16 seq393 98.7 9e-16 seq1014 95.1 1e-14 seq2543 86.0 6e-12 >seq18093 Length=33488 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | |||| ||||| ||||| || || || | ||| ||||| Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||||| | ||| ||||||||||| || ||||||| | || ||||| || || || Sbjct 2860 AGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2919 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| ||| ||| |||||| | | || || Sbjct 2920 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2979 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | || ||||| ||||||||||| Sbjct 2980 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 3026 >seq7076 Length=122421 Score = 100 bits (110), Expect = 3e-16 Identities = 226/337 (67%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || |||| || | ||| |||||| ||||| |||||||||||||||||| |||| || | Sbjct 32490 GAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCAC 32431 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 ||| || | ||| | | || | || || || || || || || ||||| | Sbjct 32430 CCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTC 32371 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788 |||| ||||| ||||| || || || ||||| ||||| ||| | | |||||||| | Sbjct 32370 TATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAG 32311 Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848 | | | || || || ||||| || ||| | |||| | | ||||| ||||| | Sbjct 32310 AACGTGGAGCTACTCTCCCATAGCACCCAGAAGGAAGAGCTATCTGAATGTCTGTTTTCA 32251 Query 43849 CGA-GGCTGTAGCCTTTG--GGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACC 43905 | | |||| | || | | ||| || || |||| | ||| ||||| || || || | Sbjct 32250 CAAGGGCTTTCTCCATAGGTGGTACTGTG---TAATCATAGGCACTGTATAGGTCATAGC 32194 Query 43906 CGGCGGAGAGCTTGGATCCTTTGGTGGGCGTGGTAGC 43942 | |||| ||| ||| || |||| || | ||| || Sbjct 32193 CCGCGGCACGCTCGGACCCCCTGGTCGGAGCGGTGGC 32157 >seq393 Length=578971 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 168881 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAGAA 168940 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| || ||||||| | || ||||| || || || Sbjct 168941 AGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 169000 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || ||| |||||| | | || || Sbjct 169001 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 169060 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 169061 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 169107 >seq1014 Length=401283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | ||||||||||| || || || || || | ||||| || | Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| || | || || | | ||||| || || || Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| || ||||| | | |||||| | | ||||| Sbjct 41613 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 41672 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 41673 TCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq2543 Length=251032 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||||| ||||| || || || | ||| ||||| |||||| | || ||| Sbjct 121601 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCC 121660 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| || ||||||| | || ||||| || || || || ||||| || || | Sbjct 121661 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTC-GGGGGGATGCCTTCCTTATCCTGG 121719 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || || |||||| | | || || || | ||||||||| || Sbjct 121720 ATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTG 121779 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || || || ||| | ||||||||| Sbjct 121780 CCCGTCAGGGTCTTCCCGAAGATCTGC 121806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447970654981080