Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 156 4e-33
seq36034 152 5e-32
seq6140 123 3e-23
seq25410 102 9e-17
seq41499 98.7 1e-15
seq1670 93.3 4e-14
>seq1525
Length=329219
Score = 156 bits (172), Expect = 4e-33
Identities = 483/742 (65%), Gaps = 12/742 (2%)
Strand=Plus/Minus
Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229
|||| | |||||| | ||||| || | ||||| || || || || || ||||| |||
Sbjct 305181 GACAKCACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 305122
Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289
|||| ||| ||| |||||||| |||||||||||||| | || | || || ||
Sbjct 305121 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAA 305062
Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348
||||| || | |||| ||| ||||| | |||| || || || ||| || ||||
Sbjct 305061 CCCAGCTC-CAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACA 305003
Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408
|||||| ||||| | || || | || | || | | ||||| ||
Sbjct 305002 ATTCATCCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAAC 304943
Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTA 21466
|| || || ||||| || || || | ||| | | | |||||
Sbjct 304942 TGCACTGACGAT--TATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 304885
Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526
||||||| || ||||| ||||| || ||||| || || || || || | |||||| |||
Sbjct 304884 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 304825
Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586
||||| | |||||||| | ||||| || || | ||| ||||| || ||||| | ||
Sbjct 304824 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 304765
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646
|||||||| ||||| || || || ||||| || | | ||||| || || |||| |||
Sbjct 304764 GAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCT 304705
Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705
| ||| ||||| ||||| | |||||| |||||| | |||| ||||| ||
Sbjct 304704 GTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTC 304646
Query 21706 AATAGCTTTTAAAAGATGAtt-tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764
||| || || || ||| |||| |||| | ||| | | |
Sbjct 304645 AATGGCGTTGAAGAGA-GATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGA 304587
Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824
|||||||||||| |||||||| ||||| || || || || || || || ||| | |
Sbjct 304586 GACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGG 304527
Query 21825 CCTCTGAACAT-TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883
| || | ||| ||| | || || || | ||| |||||||||||||| |||
Sbjct 304526 CTTCCG-TCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCA 304468
Query 21884 TCACTGGCGGCAAAAAATGCCA 21905
||||| || ||| | || ||||
Sbjct 304467 TCACTTGCTGCAGAGAAAGCCA 304446
>seq36034
Length=1448
Score = 152 bits (168), Expect = 5e-32
Identities = 372/556 (67%), Gaps = 11/556 (2%)
Strand=Plus/Minus
Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229
||||| | || ||| | ||||| || | ||||| || || | || || ||||| |||
Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506
Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289
|||| ||| ||| ||||||| |||||||||||||| | | || | || || ||
Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446
Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348
||||| || | |||| ||| ||||| |||||||| || || || ||| || ||
Sbjct 445 CCCAGCTC-CAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCA 387
Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408
|||||| || || | || || || || || | || | || | |||||| ||
Sbjct 386 ATTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAAC 327
Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTA 21466
|| | || || ||||| || || || | ||| | | | |||||
Sbjct 326 TGCATTGACGAT--TATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 269
Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526
||||||| || ||||| ||||| || ||||| || || || || || | |||||| |||
Sbjct 268 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 209
Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586
||||| | | |||||| | |||| ||||| | ||| ||||| || ||||| | ||
Sbjct 208 AATGTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCA 149
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646
|||||| || || || || ||| |||| || | | ||||| || || |||| |||
Sbjct 148 GAAAAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCT 92
Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705
|| ||| ||||| ||||| | || ||| |||||| | |||| ||||| ||
Sbjct 91 TTGTCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTT-ACACAAGGCATTGTCTC 33
Query 21706 AATAGCTTTTAAAAGA 21721
|||||| || || |||
Sbjct 32 AATAGCGTTGAAGAGA 17
>seq6140
Length=138118
Score = 123 bits (136), Expect = 3e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
|| ||||| || ||||| | | | ||||| ||| | ||||||||||| ||||| |||
Sbjct 111613 AGCTCTTCCTCGGTTTCGAACTGAGCAAGAACAGCTTCTAATGAAGTACAGAATGTCTTG 111554
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| ||||||||||| ||| ||||||||||| ||||| || ||| |||||||||||||
Sbjct 111553 CTGAATGTCCAATTCCTTGCGTCTTCAGAAAAATAAAAACACTTACTTCCAAATCCAATC 111494
Query 130773 CATCCCTTTGGGCAAGTAACATA 130795
||| | |||||||| || |||||
Sbjct 111493 CATTCTTTTGGGCAGGTGACATA 111471
>seq25410
Length=10104
Score = 102 bits (112), Expect = 9e-17
Identities = 201/295 (68%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
|||||||||||||||||| || ||||| || || || || || || || ||||| ||
Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|| | | ||||| || ||| || | ||||| ||||||||||||| |||||
Sbjct 10040 TTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATC 9981
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945
||| || ||||| || |||| | || || ||||||| || | | | |
Sbjct 9980 ACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 9921
Query 21946 TTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004
|| ||| | || | | || || || | || || ||||||| |||||||||| |||
Sbjct 9920 TTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862
Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
||| || |||||||| ||| ||||||| ||| || ||||| || |||||
Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807
>seq41499
Length=968
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229
||||| | |||||| | ||||| || | ||||| || || || || || ||||| |||
Sbjct 919 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 860
Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289
|||| ||| ||| |||||||| |||||||||||||| | | || | || || ||
Sbjct 859 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 800
Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348
||||| || | |||| ||| ||||| || ||||| || || || ||| || ||
Sbjct 799 CCCAGCTC-CAGCATAAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCA 741
Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTT 21380
|||||| || || | || || || || ||||
Sbjct 740 ATTCATCCCAATGAGCTTCACTGGCAGGGCTT 709
>seq1670
Length=315515
Score = 93.3 bits (102), Expect = 4e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| |||||||| | ||| ||||||||| ||| | ||||| | | |
Sbjct 184313 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 184372
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || || || || || || ||
Sbjct 184373 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 184432
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276
||||||||||||| |||||||| | || |||
Sbjct 184433 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 184463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531520470981720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |