Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1525 156 4e-33 seq36034 152 5e-32 seq6140 123 3e-23 seq25410 102 9e-17 seq41499 98.7 1e-15 seq1670 93.3 4e-14 >seq1525 Length=329219 Score = 156 bits (172), Expect = 4e-33 Identities = 483/742 (65%), Gaps = 12/742 (2%) Strand=Plus/Minus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 |||| | |||||| | ||||| || | ||||| || || || || || ||||| ||| Sbjct 305181 GACAKCACTCCCATCYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 305122 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| ||| ||| |||||||| |||||||||||||| | || | || || || Sbjct 305121 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAA 305062 Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 ||||| || | |||| ||| ||||| | |||| || || || ||| || |||| Sbjct 305061 CCCAGCTC-CAGCATAAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACA 305003 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 |||||| ||||| | || || | || | || | | ||||| || Sbjct 305002 ATTCATCCCGATGAGCTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAAC 304943 Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTA 21466 || || || ||||| || || || | ||| | | | ||||| Sbjct 304942 TGCACTGACGAT--TATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 304885 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||||| || ||||| ||||| || ||||| || || || || || | |||||| ||| Sbjct 304884 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 304825 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 ||||| | |||||||| | ||||| || || | ||| ||||| || ||||| | || Sbjct 304824 AATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCA 304765 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 |||||||| ||||| || || || ||||| || | | ||||| || || |||| ||| Sbjct 304764 GAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCT 304705 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705 | ||| ||||| ||||| | |||||| |||||| | |||| ||||| || Sbjct 304704 GTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTC 304646 Query 21706 AATAGCTTTTAAAAGATGAtt-tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 ||| || || || ||| |||| |||| | ||| | | | Sbjct 304645 AATGGCGTTGAAGAGA-GATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGA 304587 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 |||||||||||| |||||||| ||||| || || || || || || || ||| | | Sbjct 304586 GACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGG 304527 Query 21825 CCTCTGAACAT-TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883 | || | ||| ||| | || || || | ||| |||||||||||||| ||| Sbjct 304526 CTTCCG-TCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCA 304468 Query 21884 TCACTGGCGGCAAAAAATGCCA 21905 ||||| || ||| | || |||| Sbjct 304467 TCACTTGCTGCAGAGAAAGCCA 304446 >seq36034 Length=1448 Score = 152 bits (168), Expect = 5e-32 Identities = 372/556 (67%), Gaps = 11/556 (2%) Strand=Plus/Minus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||| | || ||| | ||||| || | ||||| || || | || || ||||| ||| Sbjct 565 GACATCACTCTCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCT 506 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| ||| ||| ||||||| |||||||||||||| | | || | || || || Sbjct 505 TCCAGTGAAATATTCCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 446 Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 ||||| || | |||| ||| ||||| |||||||| || || || ||| || || Sbjct 445 CCCAGCTC-CAGCATAAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCA 387 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 |||||| || || | || || || || || | || | || | |||||| || Sbjct 386 ATTCATCCCAATGAGCTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAAC 327 Query 21409 GGCTTCAACAATTATATTTATTATCCTAGATGTAC--TAGGGGGATACAATAATTGTTTA 21466 || | || || ||||| || || || | ||| | | | ||||| Sbjct 326 TGCATTGACGAT--TATTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTG 269 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||||| || ||||| ||||| || ||||| || || || || || | |||||| ||| Sbjct 268 AACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAA 209 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 ||||| | | |||||| | |||| ||||| | ||| ||||| || ||||| | || Sbjct 208 AATGTGAGGCTGGGCATCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCA 149 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 |||||| || || || || ||| |||| || | | ||||| || || |||| ||| Sbjct 148 GAAAAG---ATTCCTTCCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCT 92 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705 || ||| ||||| ||||| | || ||| |||||| | |||| ||||| || Sbjct 91 TTGTCCCCGATCCAGCACAAGGCCCAATCTGTCTTCTTCTTT-ACACAAGGCATTGTCTC 33 Query 21706 AATAGCTTTTAAAAGA 21721 |||||| || || ||| Sbjct 32 AATAGCGTTGAAGAGA 17 >seq6140 Length=138118 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || ||||| || ||||| | | | ||||| ||| | ||||||||||| ||||| ||| Sbjct 111613 AGCTCTTCCTCGGTTTCGAACTGAGCAAGAACAGCTTCTAATGAAGTACAGAATGTCTTG 111554 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||| ||||||||||| ||||| || ||| ||||||||||||| Sbjct 111553 CTGAATGTCCAATTCCTTGCGTCTTCAGAAAAATAAAAACACTTACTTCCAAATCCAATC 111494 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||| | |||||||| || ||||| Sbjct 111493 CATTCTTTTGGGCAGGTGACATA 111471 >seq25410 Length=10104 Score = 102 bits (112), Expect = 9e-17 Identities = 201/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||||||||||||||| || ||||| || || || || || || || ||||| || Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | | ||||| || ||| || | ||||| ||||||||||||| ||||| Sbjct 10040 TTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATC 9981 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 ||| || ||||| || |||| | || || ||||||| || | | | | Sbjct 9980 ACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGC 9921 Query 21946 TTTCCAAT-CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 || ||| | || | | || || || | || || ||||||| |||||||||| ||| Sbjct 9920 TTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||| || |||||||| ||| ||||||| ||| || ||||| || ||||| Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807 >seq41499 Length=968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||| | |||||| | ||||| || | ||||| || || || || || ||||| ||| Sbjct 919 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 860 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 |||| ||| ||| |||||||| |||||||||||||| | | || | || || || Sbjct 859 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAA 800 Query 21290 CCCAGTTCTGATAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 ||||| || | |||| ||| ||||| || ||||| || || || ||| || || Sbjct 799 CCCAGCTC-CAGCATAAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCA 741 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTT 21380 |||||| || || | || || || || |||| Sbjct 740 ATTCATCCCAATGAGCTTCACTGGCAGGGCTT 709 >seq1670 Length=315515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| | ||||| | | | Sbjct 184313 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCCGCCATAACTGCAAAAC 184372 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 184373 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTT 184432 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 184433 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 184463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531520470981720