Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1525 325 5e-84 seq36034 203 4e-47 seq25410 174 2e-38 seq3603 140 4e-28 seq549 138 1e-27 seq1670 107 2e-18 seq7076 105 8e-18 seq27717 100 4e-16 >seq1525 Length=329219 Score = 325 bits (360), Expect = 5e-84 Identities = 546/787 (69%), Gaps = 8/787 (1%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 ||| |||||| |||| || | ||| ||| ||| || |||| |||||||| | Sbjct 305224 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACAKCACTCCCATCYT 305165 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || | || || || || ||||| || ||||||| ||| ||||| || Sbjct 305164 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 305105 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || ||||| ||||| || ||| || |||| |||| || || | Sbjct 305104 CATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 305045 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 ||| || || | ||||| || || ||||||| |||||||||| || || || || Sbjct 305044 TCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCATCCCGATGAGCTT 304985 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT-ATAATAG 33253 |||| ||| | || || || ||||| | || ||| ||| || || Sbjct 304984 CACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCA-CTGACGATTATTT 304926 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAAT 33313 | | || | | || ||| || | | ||||| ||||||| || || || | Sbjct 304925 CTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGT 304866 Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373 | ||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||||||| | Sbjct 304865 CACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCA 304806 Query 33374 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTA 33433 | || || || || ||||| ||||| || || || || |||||||||||||| ||||| | Sbjct 304805 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 304746 Query 33434 CTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 33490 |||| |||||||| || | | |||||||| | | | |||| | ||||| Sbjct 304745 CTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCAGCGCA 304686 Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 |||||||| |||||||| |||||||||||||| || || ||||| || |||||| | | Sbjct 304685 AGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAGATT 304626 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33610 |||| || ||||||||| ||||| || | | |||||||||||||||||||| | Sbjct 304625 CCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATACATTTCCGAATGTA 304566 Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 33670 ||||||| ||||| || || || || |||||| | || || || ||||| ||||| Sbjct 304565 TGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGTCATCTGAGCTTCTT 304506 Query 33671 TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | || || ||| ||| |||||||| |||| || ||||| |||||| | || |||| Sbjct 304505 GGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAGCCA 304446 Query 33731 ATACATG 33737 ||||| Sbjct 304445 GGACATG 304439 >seq36034 Length=1448 Score = 203 bits (224), Expect = 4e-47 Identities = 403/595 (68%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 33014 ||| |||||| |||| || | ||| ||| ||| || ||||| |||| ||| | Sbjct 608 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGACATCACTCTCATCCT 549 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || | || || | || ||||| || ||||||| ||| ||||| | Sbjct 548 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCCC 489 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| || ||||| ||||| || | ||| || |||| |||| || || | Sbjct 488 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCATAAG 429 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 ||| || || || ||||| || || ||||||| |||||||| || || || || Sbjct 428 TCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 369 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 ||||| || ||| | || || || || ||||| || || |||| || || Sbjct 368 CACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTC 309 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 | | || | | || ||| || | | ||||| ||||||| || || || || Sbjct 308 TTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTC 249 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||||| | |||||||||||| ||||| ||||| |||||||| ||||| | |||||| || Sbjct 248 ACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCTGGGCATCAG 189 Query 33375 GCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 || || ||||| ||||| ||||| || || || || |||||| ||||||||||| || Sbjct 188 ACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAA---AAGATTCCTTCCAC 132 Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 33491 |||| ||||||| | | |||||||| | | | |||| ||||| Sbjct 131 TGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGCACAA 72 Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 |||||||| | |||||| |||||||||||||| || || || || || |||||| Sbjct 71 GGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGA 17 >seq25410 Length=10104 Score = 174 bits (192), Expect = 2e-38 Identities = 216/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 |||||||||||||| ||||| |||||||| ||||| || || || || |||||||| Sbjct 10102 AGACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGG 10043 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCG 33708 || || |||||||| |||||| | ||| || ||| |||| ||||||| ||||| || Sbjct 10042 GCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCA 9983 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33768 ||||| |||||||| || |||| ||||| || |||||| | || || || | || Sbjct 9982 TCACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGG 9923 Query 33769 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 | ||| | | || || || || | || || ||||| |||||||||| || ||| Sbjct 9922 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCC 9863 Query 33829 TCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || || || |||||||| | ||| || |||| |||| ||| || || || ||||| Sbjct 9862 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807 >seq3603 Length=202440 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 28560 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 28501 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 28500 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 28441 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 28440 CTGTTTCTTATACCATA 28424 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 19861 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 19802 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 19801 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 19742 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 19741 AGGCTCCAGGTAAATAGC 19724 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || |||||||| || || || || || || | Sbjct 24207 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 24148 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 24147 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 24088 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 24087 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 24030 >seq549 Length=511996 Score = 138 bits (152), Expect = 1e-27 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || |||| Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| ||||| ||||||| Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574 Query 33446 C 33446 | Sbjct 260575 C 260575 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 262451 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATGGC 262510 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | ||| || || Sbjct 262511 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAACCGCTC 262570 Query 33684 CGCC 33687 | || Sbjct 262571 CACC 262574 >seq1670 Length=315515 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| || ||||| ||||| || || | || || Sbjct 206376 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 206435 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 206436 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 206494 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||||||||||||||||||||| || || | || |||| Sbjct 210682 CCAAATTTTCATTCACAATTCCGTCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 210741 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 |||| || || |||| | | || || ||||| | | || ||| || |||| ||| || Sbjct 210742 AATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATAAATCAAC 210799 >seq7076 Length=122421 Score = 105 bits (116), Expect = 8e-18 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 32540 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 32483 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| |||| | | || ||||| || |||| ||| || | || Sbjct 32482 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTG 32423 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 32422 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 32363 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || ||||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 32362 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 32303 Query 31282 GCTATTCTACCATAGCA 31298 |||| ||| |||||||| Sbjct 32302 GCTACTCTCCCATAGCA 32286 >seq27717 Length=6327 Score = 100 bits (110), Expect = 4e-16 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31047 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCT 31104 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 4398 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 4341 Query 31105 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31164 || | |||||| ||| |||| |||| | | || ||||| || |||| ||| || | || Sbjct 4340 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGGGCAATTCGATCACCCTTTTTG 4281 Query 31165 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31224 || | |||| | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 4280 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 4221 Query 31225 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31281 || |||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 4220 TCATCTACGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 4161 Query 31282 GCTATTCTACCATAGCA 31298 |||| ||| |||||||| Sbjct 4160 GCTACTCTCCCATAGCA 4144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622501769391480