Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq41499 86.0 5e-12 seq18093 84.2 2e-11 >seq41499 Length=968 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 104593 TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATA 104652 || |||||||||| || ||||| || |||||||| || ||||| |||||||| | |||| Sbjct 898 TACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATA 839 Query 104653 AATTCGAAAGGATTCAA-AGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711 || || || ||||| | ||| |||| || | | ||| |||| | || |||| Sbjct 838 AAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCA-GCTCCAGCATAAGTCT 780 Query 104712 ATCCGCCACAAATTCGATGTACT 104734 || ||||| ||||||||||||| Sbjct 779 GTCTGCCACRAATTCGATGTACT 757 >seq18093 Length=33488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || || || || ||||| || | || ||| | || || ||| | Sbjct 3030 CAAAATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGCC 2971 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || ||||||||||| || || || Sbjct 2970 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCTGA 2911 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||||| || || | | ||||| || || ||||||| | | | ||||| Sbjct 2910 CCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCACACTCTTTCTGATTA 2851 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| ||||| Sbjct 2850 CAACATCCAGAAAGAGTCTAC 2830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429636265146465