Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1014 102 8e-17
seq17051 96.9 3e-15
seq561 95.1 1e-14
seq393 93.3 4e-14
seq18093 89.7 5e-13
seq10582 82.4 7e-11
>seq1014
Length=401283
Score = 102 bits (112), Expect = 8e-17
Identities = 163/233 (70%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| |||||| |||| ||| ||||| || || | ||| ||||| || || || || ||
Sbjct 41487 ATGATGCCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAG 41546
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
|| || ||||| ||||| ||||| ||||| ||| | || | ||||||||||||
Sbjct 41547 TCTGACAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCA 41606
Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181
|| ||||| || || ||||| |||||| |||| | ||| | || || ||| |
Sbjct 41607 GGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGC 41666
Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | || | ||| || || || | || || || || ||||||||
Sbjct 41667 TCGACCTCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719
>seq17051
Length=38469
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| || | | || ||| | ||| | || |||||||||||||||||||| ||
Sbjct 11474 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 11415
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| || || || || || |||||||| || |||| | | ||| |||| ||||
Sbjct 11414 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGG 11355
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||||| ||||| ||| || ||| | | |||| ||||| | || ||||
Sbjct 11354 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGAC 11295
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || || || ||||||||||||||
Sbjct 11294 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247
>seq561
Length=508305
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | || ||| | ||| | || ||||||||||||||||||| || |
Sbjct 125896 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 125837
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || || || || |||||||| || |||| | | |||||||| |||||
Sbjct 125836 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 125777
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| ||||| ||| || ||| | | || | |||||| || ||||
Sbjct 125776 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACC 125717
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || || || ||||||||||||||
Sbjct 125716 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670
>seq393
Length=578971
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | || ||| || || | || | |||||| || || || |||||||||||
Sbjct 168879 AGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGAATCTTTCTGGATGTTGTAATCAG 168938
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||| || || ||||| |||||||| |||| | | ||||||||| || |
Sbjct 168939 AAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 168998
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|||| ||||| || || ||| || ||| | | ||| | || || ||| ||| |
Sbjct 168999 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 169058
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || || || || || ||||||||
Sbjct 169059 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 169107
>seq18093
Length=33488
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | || ||| || || | || | ||| ||||| || || |||||||||||
Sbjct 2798 AGCCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAG 2857
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||| | || || ||||| |||||||| |||| | | ||||||||| || |
Sbjct 2858 AAAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGG 2917
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|||| |||||||| || ||| || ||| | | ||| | || || ||| ||| |
Sbjct 2918 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 2977
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || | || || ||||| ||||||||
Sbjct 2978 CCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 3026
>seq10582
Length=81843
Score = 82.4 bits (90), Expect = 7e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 131042 ACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGT 131101
||||||||||||||||||| || || || | || || || |||||||| ||
Sbjct 38550 ACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAA 38609
Query 131102 AGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT 131161
|||| | | |||||||| ||||| |||||||| ||||| || || ||| | |
Sbjct 38610 AGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGT 38669
Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221
|| | ||||| | || |||| |||| || | ||| || || || || || || |
Sbjct 38670 TTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCA 38729
Query 131222 CGAAAATCTGCAT 131234
|||||||||||||
Sbjct 38730 CGAAAATCTGCAT 38742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471675293147520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |