Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq561 111 1e-19 seq17051 105 4e-18 seq10582 96.9 2e-15 seq3255 95.1 8e-15 seq18093 91.5 1e-13 seq1039 91.5 1e-13 seq1014 86.0 4e-12 seq7012 84.2 1e-11 seq6983 82.4 5e-11 seq5846 82.4 5e-11 >seq561 Length=508305 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 125882 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 125823 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 125822 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 125763 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| || || | | ||||| | ||| || || | || || || Sbjct 125762 CTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATGGT 125703 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || |||| ||| |||||||| |||||||| || Sbjct 125702 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667 >seq17051 Length=38469 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 11459 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 11400 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| | ||| || | ||||| ||||| Sbjct 11399 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCCTTGTC 11340 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| || || | | ||||| ||| || || | || || || Sbjct 11339 CTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 11280 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 11279 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244 >seq10582 Length=81843 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| ||||| ||||||||| | || | || Sbjct 38530 CAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 38589 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| ||||| Sbjct 38590 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 38649 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | | || ||| || || | | ||||| ||| || || | || || || Sbjct 38650 CTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 38709 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| |||||||| |||||||| || Sbjct 38710 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 38745 >seq3255 Length=215076 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||| ||||||||||||||| ||||||| |||||||| ||| | || |||||| | Sbjct 147406 AAGCCTGTTCCCTTGGCTGTGTTTTCGCTGGATAGTAGGTAGGAACAGTGGGAATCTCAT 147465 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||||||||||||||| Sbjct 147466 TCATCCATTCATGTGCACCACTAATTAGATGACGA 147500 >seq18093 Length=33488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || | ||||| || ||||| || || | || || || | |||| Sbjct 2860 AGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2919 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| || || |||||| |||| || || || | || || Sbjct 2920 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2979 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||||||| |||||||| |||||||| || Sbjct 2980 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 3029 >seq1039 Length=395486 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||| | ||||||||||| ||||| |||||||||| |||| | || Sbjct 352043 CAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCATC 351984 Query 38165 GTCTA-ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 || | ||| || || ||||| || || | ||| || || | || | |||| |||| Sbjct 351983 TTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTTCTTGT 351924 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 || || || ||| ||||| | | | ||| ||| || | | || || | Sbjct 351923 CCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTTAAGAGTGATGG 351864 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||||||| ||| |||||||| |||||||| || Sbjct 351863 TCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 351827 >seq1014 Length=401283 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| || ||| | |||||| || || ||| ||| || || ||||| || || ||| Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| || || || || || || || || || | ||| Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| ||||| || ||||||| | || || | || || Sbjct 41613 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 41672 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || ||||||||||| ||||| || |||||||| Sbjct 41673 TCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq7012 Length=123366 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/86 (81%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 || ||||||||||||||| ||| |||||||| ||||| || |||||| || |||| Sbjct 76408 TTTCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCA 76467 Query 25964 TTCATGCGCGTCACTAATTAGATGAC 25989 ||||||| ||| ||||||||||||| Sbjct 76468 TTCATGCATGTCCCTAATTAGATGAC 76493 >seq6983 Length=123737 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||||||||| ||||| |||||| || | | | || || | ||| || || ||||| Sbjct 100604 CTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 100663 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || | ||| || | | |||| |||||||| ||| || || ||| ||||| Sbjct 100664 GATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTTACATT 100723 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | |||||| | |||||| | | || || || || || |||| ||| |||| Sbjct 100724 TTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCAT 100783 Query 38306 GAATATCTGCATGTT 38320 ||| |||||||| || Sbjct 100784 GAAAATCTGCATCTT 100798 >seq5846 Length=143565 Score = 82.4 bits (90), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 4/81 (5%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| Sbjct 114488 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAATACTTGTTGACTATGGGTCTCGC 114429 Query 20007 ----GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 114428 TCGAGCTGGTATTTAGCTTTA 114408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334713687686693