Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq561 111 1e-19
seq17051 105 4e-18
seq10582 96.9 2e-15
seq3255 95.1 8e-15
seq18093 91.5 1e-13
seq1039 91.5 1e-13
seq1014 86.0 4e-12
seq7012 84.2 1e-11
seq6983 82.4 5e-11
seq5846 82.4 5e-11
>seq561
Length=508305
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 125882 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 125823
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| || || | || | ||||| |||||
Sbjct 125822 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 125763
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| || || | | ||||| | ||| || || | || || ||
Sbjct 125762 CTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATGGT 125703
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || |||| ||| |||||||| |||||||| ||
Sbjct 125702 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667
>seq17051
Length=38469
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 11459 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 11400
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| | ||| || | ||||| |||||
Sbjct 11399 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCCTTGTC 11340
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| || || | | ||||| ||| || || | || || ||
Sbjct 11339 CTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 11280
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||| ||| |||||||| |||||||| ||
Sbjct 11279 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244
>seq10582
Length=81843
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||| ||| |||||||||||| ||||| ||||||||| | || | ||
Sbjct 38530 CAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 38589
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| || || | || | ||||| |||||
Sbjct 38590 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 38649
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| | || ||| || || | | ||||| ||| || || | || || ||
Sbjct 38650 CTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 38709
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||| ||| |||||||| |||||||| ||
Sbjct 38710 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 38745
>seq3255
Length=215076
Score = 95.1 bits (104), Expect = 8e-15
Identities = 78/95 (82%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956
||||| ||||||||||||||| ||||||| |||||||| ||| | || |||||| |
Sbjct 147406 AAGCCTGTTCCCTTGGCTGTGTTTTCGCTGGATAGTAGGTAGGAACAGTGGGAATCTCAT 147465
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| || |||||||||||||||||
Sbjct 147466 TCATCCATTCATGTGCACCACTAATTAGATGACGA 147500
>seq18093
Length=33488
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||| ||| | |||| || || || ||| || || || |||||||||||
Sbjct 2800 CCACCTCTCAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 2859
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | | | || || | ||||| || ||||| || || | || || || | ||||
Sbjct 2860 AGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 2919
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||||||| ||| || || |||||| |||| || || || | || ||
Sbjct 2920 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 2979
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||||||| |||||||| |||||||| ||
Sbjct 2980 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTTT 3029
>seq1039
Length=395486
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/217 (70%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||| | ||||||||||| ||||| |||||||||| |||| | ||
Sbjct 352043 CAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCCATC 351984
Query 38165 GTCTA-ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223
|| | ||| || || ||||| || || | ||| || || | || | |||| ||||
Sbjct 351983 TTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTTCTTGT 351924
Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283
|| || || ||| ||||| | | | ||| ||| || | | || || |
Sbjct 351923 CCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTTAAGAGTGATGG 351864
Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| || ||||||| ||| |||||||| |||||||| ||
Sbjct 351863 TCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 351827
>seq1014
Length=401283
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||||| || ||| | |||||| || || ||| ||| || || ||||| || || |||
Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | ||||| || || || || || || || || || | |||
Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || ||||| ||||| || ||||||| | || || | || ||
Sbjct 41613 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 41672
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || || ||||||||||| ||||| || ||||||||
Sbjct 41673 TCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719
>seq7012
Length=123366
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/86 (81%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963
|| ||||||||||||||| ||| |||||||| ||||| || |||||| || ||||
Sbjct 76408 TTTCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCA 76467
Query 25964 TTCATGCGCGTCACTAATTAGATGAC 25989
||||||| ||| |||||||||||||
Sbjct 76468 TTCATGCATGTCCCTAATTAGATGAC 76493
>seq6983
Length=123737
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
|||||||||||| ||||| |||||| || | | | || || | ||| || || |||||
Sbjct 100604 CTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 100663
Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245
|| || | ||| || | | |||| |||||||| ||| || || ||| |||||
Sbjct 100664 GATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTTACATT 100723
Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305
| | |||||| | |||||| | | || || || || || |||| ||| ||||
Sbjct 100724 TTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCAT 100783
Query 38306 GAATATCTGCATGTT 38320
||| |||||||| ||
Sbjct 100784 GAAAATCTGCATCTT 100798
>seq5846
Length=143565
Score = 82.4 bits (90), Expect = 5e-11
Identities = 67/81 (83%), Gaps = 4/81 (5%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct 114488 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAATACTTGTTGACTATGGGTCTCGC 114429
Query 20007 ----GGTAATATTTAGCCTTA 20023
| | |||||||| |||
Sbjct 114428 TCGAGCTGGTATTTAGCTTTA 114408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334713687686693
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |