Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1525 232 7e-56 seq25410 178 1e-39 seq549 100 3e-16 >seq1525 Length=329219 Score = 232 bits (256), Expect = 7e-56 Identities = 349/491 (71%), Gaps = 4/491 (1%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| |||| | | ||| |||| | ||| |||||||| |||||||| |||||| Sbjct 304905 GGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCT 304846 Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 | || || || | ||||| ||||| | || || | ||||||||||||||||||||| Sbjct 304845 C-TGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCA 304787 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| || |||||| ||||||||| || || |||||||| || ||||| || | | Sbjct 304786 GAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGAC 304727 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTT 93299 |||||| || | | || | | || |||||| || |||||||| || || | Sbjct 304726 ACGTTCTCCATACGTAGCCTCTGTG-TCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCT 304668 Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359 |||| | |||||| | ||| || || ||||| || || | || | || | |||||| Sbjct 304667 TCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAGATTCCCTTTCTTTGGAATCTT 304608 Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 | ||| || || | | ||| ||||||||| ||||| | || ||||| ||||||| Sbjct 304607 TAACGTAAGTGTCATTGAGGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTT 304548 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479 |||| || |||||| | |||||||| ||||| ||||||| || | ||| || | Sbjct 304547 GGAAGCCATAGAAATCACGGGCTTCCGTCATCTGAGCTTCTTGGCTAAGCCGCTCCACCA 304488 Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 | |||||||| |||| ||||| ||||||| | ||||||| | |||| || |||| Sbjct 304487 GGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAGCCAGGACATGCGAAATGAAAT 304428 Query 93540 GTTTCTCATCA 93550 || |||| ||| Sbjct 304427 GTCTCTCCTCA 304417 >seq25410 Length=10104 Score = 178 bits (196), Expect = 1e-39 Identities = 216/292 (74%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 ||||||||||||||||| || ||||| ||||||||||| || |||||||| ||||| Sbjct 10097 ATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGCTTC 10038 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 ||| ||||| |||||||| ||| | ||| || | ||||||| ||||| ||||| Sbjct 10037 CGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCATCACT 9978 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564 ||||||||| ||||||| | |||| || |||| | |||| ||| || || || Sbjct 9977 TGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGGCTTC 9918 Query 93565 CCAAT-CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| | | || | || || ||||| || || ||||| | |||||||| || || || | Sbjct 9917 CCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAG 9859 Query 93624 CTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 |||| || ||||| | ||| || || || |||| || ||||| |||||||| Sbjct 9858 CTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807 >seq549 Length=511996 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||||| || ||||| Sbjct 262449 GAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGGATGTTTTCCATG 262508 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||||||||| || |||||||| | |||||||| ||||| |||||||| Sbjct 262509 GCAATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCTTG 262558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556462623645720