Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1014 125 6e-24 seq393 93.3 4e-14 seq17051 91.5 1e-13 seq561 87.8 2e-12 >seq1014 Length=401283 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || || || || || || || || ||||||| || || || ||| Sbjct 41721 AGATGCAGATCTTAGTGAAGACCTTGACGGGCAAGACCATCACTCTAGAGGTCGAGCCCA 41662 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||| |||||||||||||| || ||||| || | Sbjct 41661 GTGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 41602 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || || ||||||||| | |||||| |||||| | || || || | Sbjct 41601 AGCAGCGTCTGATTTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTATA 41542 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || || ||||| |||||| | || || || | || |||| || || Sbjct 41541 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGTCTGCGAGGTGG 41493 >seq393 Length=578971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || ||||| || || | ||||| || || |||| || || ||||| Sbjct 169113 GTCAAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 169054 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || || ||||| || || || || Sbjct 169053 CCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCT 168994 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||||||| | || ||| |||||| | || ||| Sbjct 168993 GACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACTCTTTCTGAT 168934 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 168933 TACAACATCCAGAAAGATTCGACC 168910 >seq17051 Length=38469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || ||||||| || || ||| || Sbjct 11244 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 11303 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| |||| | | || || || || |||||||| || ||||| | ||| Sbjct 11304 TCGGATACAATGGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCTCGAC 11363 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | ||| | || || ||||| ||||| || | || ||| || || | || || ||| Sbjct 11364 CGGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 11423 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||||| | ||| | || ||| || | || || || Sbjct 11424 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 11473 >seq561 Length=508305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || || || || ||||||| || || ||| || Sbjct 125667 AATATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTCGAACCC 125726 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||| | || | | || || || || |||||||| || ||||| || || Sbjct 125727 TGCGATACAATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 125786 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || | || ||| || || | || || ||| Sbjct 125787 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 125846 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || | ||| | ||| | || ||| || | || || ||| Sbjct 125847 AACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 125897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419435381771695