Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq561 118 9e-22
seq17051 113 4e-20
seq10582 109 5e-19
seq393 98.7 8e-16
seq5560 95.1 1e-14
seq18093 89.7 4e-13
seq1608 87.8 2e-12
>seq561
Length=508305
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | || | || |||||||||||||| ||
Sbjct 125897 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGA 125838
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| |||||| |||||| ||||| || ||||| |||| || | || ||||| |||||
Sbjct 125837 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 125778
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| |||| | ||| | || ||| || ||||||
Sbjct 125777 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGAC 125718
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || ||||| || || || |||||||||||
Sbjct 125717 CTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670
>seq17051
Length=38469
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| |||||||| || | ||| | || || || |||||||||||||| || |
Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| |||||| |||||| ||||| || ||||| |||| || | || |||| |||||
Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| ||||| ||||| ||||| |||| | ||| | || || | || ||||||
Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || ||||| || || || |||||||||||
Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247
>seq10582
Length=81843
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||| | |||||||| || | ||| | ||| | || |||||||||||||| ||
Sbjct 38515 ACCACCATGAAGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGA 38574
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| |||| | |||||| ||||| || ||||| |||| || | || ||||| |||||
Sbjct 38575 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 38634
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| | ||| |||| | ||| | || || | || ||||||
Sbjct 38635 AATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGAC 38694
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || ||||| || || || |||||||||||
Sbjct 38695 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742
>seq393
Length=578971
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || ||||| ||
Sbjct 168911 GTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 168970
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| || || |||||||| || || ||||| ||
Sbjct 168971 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 169030
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 169031 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 169090
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 169091 TTCACAAAGATCTGCAT 169107
>seq5560
Length=149305
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||| | ||||||| || | ||| | ||||| || |||||||||||||| ||
Sbjct 93423 ACCACCATGAAGTCTCACTACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 93364
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| |||||| |||||| ||||| || ||||| |||| || | || ||||| |||||
Sbjct 93363 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 93304
Query 114275 AATGCCTTCTTTGTC 114289
||| ||||| |||||
Sbjct 93303 AATTCCTTCCTTGTC 93289
>seq18093
Length=33488
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| ||||| || ||||||||||| | ||| | |||||| || ||||| ||
Sbjct 2830 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCT 2889
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| || || ||||||||||| || ||||| ||
Sbjct 2890 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 2949
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||| |||| ||
Sbjct 2950 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 3009
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 3010 TTCACGAAGATCTGCAT 3026
>seq1608
Length=321383
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 11/230 (5%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||| | |||||||| || | ||| | | || || |||||| |||| | ||
Sbjct 105351 ACCACCATGAAGTCTCAACACAAGATGAAGACTGGACTCCTTTTGAGTGTTTTGGTCAGA 105410
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| |||||| |||||| ||||| || ||||| |||| || | || ||||| |||||
Sbjct 105411 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 105470
Query 114275 AATGCCTTCTTTGTC--GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||| ||||| || || ||| |||| ||| ||||| || || | || ||||
Sbjct 105471 AATTCCTTCCTTATCCTGGC---CTTTACATTTT-CTGTT-----GTATCCGAGGGTTCG 105521
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || || || ||||| || || || |||||||||||
Sbjct 105522 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 105571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419841498445236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |