Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 154 3e-32
seq36034 122 2e-22
seq549 87.8 3e-12
>seq1525
Length=329219
Score = 154 bits (170), Expect = 3e-32
Identities = 213/295 (72%), Gaps = 5/295 (2%)
Strand=Plus/Plus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668
|| ||||| ||||| ||||| ||||| || | ||||||||||| || ||||| | |
Sbjct 304631 CTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGC 304690
Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728
||||||||| | || || |||| || || | | |||||||| |||| || ||
Sbjct 304691 TGGATCGAGGACACAGAGGCTACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAA 304750
Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGAT 42787
||||||||||| || || | || || || || |||||||||||| | ||| | |||
Sbjct 304751 GGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACT-GAT 304809
Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847
|||||| ||||| || || || ||||| || ||||| |||||||| | || | |||||
Sbjct 304810 GCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTT 304869
Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902
||||||||| ||||| | ||||| ||||| || ||| || || | |||
Sbjct 304870 TGCCTGCCTGATGTTC---AAACACCTGCTACACAAACCTTCGGAGCAGAGAGTC 304921
>seq36034
Length=1448
Score = 122 bits (134), Expect = 2e-22
Identities = 245/358 (68%), Gaps = 8/358 (2%)
Strand=Plus/Plus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668
|| ||||| || || ||||| ||||| || | ||||||||| | || ||||| | |
Sbjct 18 CTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGACAGATTGGGCCTTGTGC 77
Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728
||||||| | || || |||| || || | | | ||||||| || || ||
Sbjct 78 TGGATCGGGGACAAAGAGGCTACGTATGGAGAACGTGTCGCAGCCTTTGTTGCAGTGGAA 137
Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787
|| ||||| |||| || | || || || || ||||||||||| | |||| | |||
Sbjct 138 GGAATCTT-TTCT--GGTTCTTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCT-GAT 193
Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847
|||| | ||||| || || || ||||| || ||||| |||||||| | || | |||||
Sbjct 194 GCCCAGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTT 253
Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907
||||||||| ||||| | ||||| ||||| || ||| || || | ||| |
Sbjct 254 TGCCTGCCTGATGTTC---AAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAAGA 310
Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965
|| ||| | || || ||| || |||||||||||||| || | ||||| |||
Sbjct 311 AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCAGTG 368
>seq549
Length=511996
Score = 87.8 bits (96), Expect = 3e-12
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
||||||||| |||| || || || |||||||| || || | || || || || ||||||
Sbjct 260578 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 260519
Query 42768 CTC-AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826
||| || | |||| | ||||||||| ||||| || || || ||||| || ||||| ||
Sbjct 260518 CTCAAAAAACGAGGTCT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 260460
Query 42827 CGAGG 42831
|||||
Sbjct 260459 CGAGG 260455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943663962059280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |