Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1525 154 3e-32 seq36034 122 2e-22 seq549 87.8 3e-12 >seq1525 Length=329219 Score = 154 bits (170), Expect = 3e-32 Identities = 213/295 (72%), Gaps = 5/295 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| ||||| ||||| || | ||||||||||| || ||||| | | Sbjct 304631 CTCTTCAACGCCATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCGC 304690 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||||| | || || |||| || || | | |||||||| |||| || || Sbjct 304691 TGGATCGAGGACACAGAGGCTACGTATGGAGAACGTGTCATAGCCTTTGCCGCAGTGGAA 304750 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGAT 42787 ||||||||||| || || | || || || || |||||||||||| | ||| | ||| Sbjct 304751 GGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACT-GAT 304809 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 |||||| ||||| || || || ||||| || ||||| |||||||| | || | ||||| Sbjct 304810 GCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTT 304869 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 ||||||||| ||||| | ||||| ||||| || ||| || || | ||| Sbjct 304870 TGCCTGCCTGATGTTC---AAACACCTGCTACACAAACCTTCGGAGCAGAGAGTC 304921 >seq36034 Length=1448 Score = 122 bits (134), Expect = 2e-22 Identities = 245/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||| ||||| || | ||||||||| | || ||||| | | Sbjct 18 CTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGACAGATTGGGCCTTGTGC 77 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||| | || || |||| || || | | | ||||||| || || || Sbjct 78 TGGATCGGGGACAAAGAGGCTACGTATGGAGAACGTGTCGCAGCCTTTGTTGCAGTGGAA 137 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 || ||||| |||| || | || || || || ||||||||||| | |||| | ||| Sbjct 138 GGAATCTT-TTCT--GGTTCTTTTGCATCGATATTCTGGCTCAAAAAACGAGGTCT-GAT 193 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 |||| | ||||| || || || ||||| || ||||| |||||||| | || | ||||| Sbjct 194 GCCCAGCCTCACATTTTCCAATGAACTTATTAGCAGAGACGAGGGTTTACACTGTGACTT 253 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 ||||||||| ||||| | ||||| ||||| || ||| || || | ||| | Sbjct 254 TGCCTGCCTGATGTTC---AAACACCTGCTACACAAACCTTCGGAGCAGAGAGTCAAAGA 310 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 || ||| | || || ||| || |||||||||||||| || | ||||| ||| Sbjct 311 AATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCAGTG 368 >seq549 Length=511996 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || || |||||||| || || | || || || || |||||| Sbjct 260578 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 260519 Query 42768 CTC-AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||| || | |||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 260518 CTCAAAAAACGAGGTCT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 260460 Query 42827 CGAGG 42831 ||||| Sbjct 260459 CGAGG 260455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943663962059280