Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq18172 183 3e-41 seq15026 104 2e-17 seq293 91.5 1e-13 >seq18172 Length=33122 Score = 183 bits (202), Expect = 3e-41 Identities = 420/631 (67%), Gaps = 7/631 (1%) Strand=Plus/Minus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||| ||||||||||| ||||| | ||| || || || | || | || || Sbjct 27422 GTAAATGTGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCGCGTGGTGTG 27363 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || |||| |||||||| ||| | || || || | || ||||| Sbjct 27362 TGCGATCATGTAGC-----AGGGCGTAGCTGGCGATGYTGAAGGGCACACYCAGGCCCAT 27308 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 |||||| |||||||| |||||||| ||||| |||||||||| | || || || || || Sbjct 27307 GTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 27248 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 | ||| || || || || ||||| | | | || ||| ||||| ||||||| Sbjct 27247 AAGGGCGTGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTCGGATTCCAAGCACACAG 27188 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATC-CACAATGTACGACAATTGGT 20489 ||||||||||| |||| || || |||| ||| || || | | | || ||| | Sbjct 27187 GATGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTG-CAGTTGAT 27129 Query 20490 CAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCC 20549 | | || || ||| ||| || | || | || ||| | | |||||| ||||||| Sbjct 27128 CTACTCCTTGATCTGAATAATCTGAATGCATATCTTTGTATTCGGTCCCAAAATGCCTCC 27069 Query 20550 ACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGG 20609 |||| || || ||||| || || |||||||| || |||| | | || | | | Sbjct 27068 ACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGT 27009 Query 20610 CCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCC 20669 ||| ||| || | ||| ||||| ||||| || || ||||| | || |||||| Sbjct 27008 CCAAGAAGTCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCT 26949 Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729 | | || || ||||| | |||||| |||| ||| | | || || || || | Sbjct 26948 TAGCGTTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAA 26889 Query 20730 CCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAA 20789 | | || || || || | ||||| | || | ||| || || | ||||||||||| | Sbjct 26888 CACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGA 26829 Query 20790 ATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 | | || |||||||| |||| |||||||| Sbjct 26828 ACACCGACAGGGTGCCGGTGCCCGTGCGGTC 26798 >seq15026 Length=49095 Score = 104 bits (114), Expect = 2e-17 Identities = 270/403 (67%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 20191 GTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATG 20250 ||| ||||| ||||||||||| ||||| | | | || || || | || || || | || Sbjct 46671 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 46730 Query 20251 AGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCAT 20310 || | ||| || || | |||| ||||||||| | ||| || | || |||| ||| | Sbjct 46731 TGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGACGTTGAAGGACACACCCAGGCCCCT 46790 Query 20311 GTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACA 20370 |||||| |||||||| |||||||| ||||| |||||| || | || || || || || Sbjct 46791 GTCTCCTGACCTCTGGTACAGCTG-CAGGACAGCTCATGGTTCACCACGTAGAAGTGGCA 46849 Query 20371 TAA--CA------AGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCAC 20422 || || || | ||||| || || | || | | ||| | | ||||| Sbjct 46850 AAAGGCATGGCACAGGGGCAGGGTGGCAG-GGTATGAGAG-GAAGATCTTTTGATTCCAA 46907 Query 20423 GCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGAC 20482 ||||| | |||||||||||| || | || || |||| ||| || | | | | Sbjct 46908 GCACATAGAATGATTCTTCTGTCTTCAGGGTTGGTTTTGATTGTGTCAATCACCTTTTGC 46967 Query 20483 AATTGGTCAAACCCCTGGCCTGTATA-GTCAGCATCCGCGTCCACGTACGCCGCC-CCAA 20540 | |||||| | || || | || ||| | |||| | || ||| | ||| |||| Sbjct 46968 AGTTGGTCTACTCCTTGACGTGAATACATTTAAATCCACATCTTTGTATTCAGCCACCAA 47027 Query 20541 AGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 || |||||||||| || | ||||| || || |||||||| || Sbjct 47028 AG-GCCTCCACTGAAAGCTATAAACTGGGCCTAAATCCCCTTC 47069 >seq293 Length=643942 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| ||| Sbjct 264046 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 263987 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGT 20351 |||||||| |||||||| |||||||| ||||| |||||||||| Sbjct 263986 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGT 263944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441057201896520