Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq561 150 4e-31 seq10582 132 1e-25 seq1014 125 2e-23 seq18093 122 2e-22 seq3456 122 2e-22 seq393 122 2e-22 seq6983 111 4e-19 seq2543 104 6e-17 seq3805 100 7e-16 seq3119 84.2 5e-11 >seq561 Length=508305 Score = 150 bits (166), Expect = 4e-31 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 125896 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 125837 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 125836 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 125780 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || |||||||| || || || ||||||||||| | ||||| | ||| Sbjct 125779 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCG 125720 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 125719 ACCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 125670 >seq10582 Length=81843 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| |||| || ||||| || || ||||| | Sbjct 38516 CCACCATGAAGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGAC 38575 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || |||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 38576 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 38632 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || ||||||| || || || ||||||||||| | ||| | ||| Sbjct 38633 GGAATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCG 38692 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 38693 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 38742 >seq1014 Length=401283 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||| ||||| |||||||||||||| | Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||||| || ||||| ||||||||||| || | |||| Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || |||||||| ||||| || || || || | || || | || || Sbjct 41613 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 41672 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| ||||| || || |||||||| Sbjct 41673 TCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq18093 Length=33488 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||| | || ||||| | ||||| ||||| ||| Sbjct 2836 TCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCTGCAAAG 2895 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || |||||||| Sbjct 2896 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 2955 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || |||| ||||| ||| Sbjct 2956 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACG 3015 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 3016 AAGATCTGCATTTTG 3030 >seq3456 Length=207676 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| | || || | || |||| || ||||| | ||||| ||||| |||| Sbjct 50583 CTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGA 50642 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || | ||| || | ||||| ||||| ||||||||||| || || |||||||| | Sbjct 50643 TAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCT 50702 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | || || || || || || || ||||| ||||| |||||||| ||||| |||| Sbjct 50703 CGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 50762 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 50763 AGATCTGCAT 50772 >seq393 Length=578971 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||||| ||||| ||| Sbjct 168917 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 168976 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| || Sbjct 168977 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 169036 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| || Sbjct 169037 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 169096 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 169097 AAGATCTGCATTTTG 169111 >seq6983 Length=123737 Score = 111 bits (122), Expect = 4e-19 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGG-CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 || ||||| || || ||||| | ||| || | || || || | ||| || || || || Sbjct 100605 TCCTTTTGAATGTTGTAGTCAGACGAA-GTATGGCCATCCTCCAGTTGCTTGCCAGCAAA 100663 Query 288342 GATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | |||| | || | ||||||||||||||||||||||| || || || || Sbjct 100664 GATCAGTCTTTGCTGGTTAGGA---GGGATTCCTTCTTTATCCTGGATCTTGGCCTTTAC 100720 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||||| | ||| | ||| || | ||| ||||| |||||||| ||||| ||||| Sbjct 100721 ATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGTCTT 100780 Query 288459 GACGAATATCTGCAT 288473 | ||| |||||||| Sbjct 100781 CATGAAAATCTGCAT 100795 >seq2543 Length=251032 Score = 104 bits (114), Expect = 6e-17 Identities = 137/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | |||| |||||||| | ||||| ||||| ||| Sbjct 121619 TCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAAG 121678 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||| ||||||||||| || || ||||| || Sbjct 121679 ATGAGCCTCTGCTG-GTCGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 121737 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | || || | || || || |||||||| ||||| || ||||| ||||| || Sbjct 121738 TTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCCCG 121797 Query 288463 AATATCTGC 288471 || |||||| Sbjct 121798 AAGATCTGC 121806 >seq3805 Length=195799 Score = 100 bits (110), Expect = 7e-16 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || |||| || ||||| | ||||| ||||| ||| Sbjct 70983 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCATCTGTTTGCCTGCAAAG 70924 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | || | ||| || | ||||| ||||||||||||||||| || || ||||| || Sbjct 70923 AGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 70864 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || | || || | ||| || || | ||||| ||||| | |||||| ||||| | | Sbjct 70863 TC---GGTGTCACTGGGTTCCACCTCCGGGGTGATGGTCTTGCAGGTCAGGGTCTTCATG 70807 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 70806 AAGATCTGCAT 70796 >seq3119 Length=221544 Score = 84.2 bits (92), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || | || | || ||| | || ||||| | || || ||||| ||| Sbjct 196864 TCTTTCTGGATGTTGTGATCAGAAAGAGTGTGGCCATCTTCCAGATGCTTGCCTGCAAAG 196805 Query 288343 ATCAGACGCTGTTGAGAATCTGG--GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 || || | ||| || || || ||| ||||| ||||||||||| || || ||||| | Sbjct 196804 ATGAGCCTCTGCTGT---TCGGGAGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACAT 196748 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || || | ||||| || || ||||| ||||| | ||||| ||||| | Sbjct 196747 TCCTGATGATGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCTGGTCAAGGTCTTCA 196688 Query 288461 CGAATATCTGCATT 288474 |||| || |||||| Sbjct 196687 CGAAGATTTGCATT 196674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178789815438634