Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1014 122 9e-23 seq561 93.3 5e-14 seq299 91.5 2e-13 seq151 91.5 2e-13 seq178 89.7 6e-13 seq21 89.7 6e-13 seq26499 87.8 2e-12 seq17051 87.8 2e-12 seq2543 87.8 2e-12 seq5058 86.0 7e-12 >seq1014 Length=401283 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||| |||| ||| ||| || || ||||| || || | | Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| || || ||||| || || ||||||||||| | ||| Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 41613 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 41672 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| |||||||| | ||||| || ||||| ||||| Sbjct 41673 TCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq561 Length=508305 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | ||| |||||||||||| ||||| |||| || ||| || | || Sbjct 125882 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 125823 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || || ||||| ||||| || || |||| |||||||| | || | | |||||||| Sbjct 125822 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTC 125763 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | | | || |||| | ||| || |||| |||||||| Sbjct 125762 CTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATGGT 125703 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || || ||||| || || || ||||| || Sbjct 125702 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667 >seq299 Length=641738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 381025 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 380966 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 380965 ATACTAACGAGGA 380953 >seq151 Length=797873 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 660105 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 660164 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 660165 ATACTAACGAGGA 660177 >seq178 Length=743899 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 645599 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 645540 Query 57066 ATACTACCGAGGATTGA 57082 |||||| |||||| ||| Sbjct 645539 ATACTAACGAGGAATGA 645523 >seq21 Length=1437949 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 85673 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 85614 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 85613 TACTAACGAGGA 85602 >seq26499 Length=8206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 57021 ATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1 ATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 58 >seq17051 Length=38469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||| | ||| | ||| |||||||||||| ||||| |||| || ||| || | || Sbjct 11459 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 11400 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || || ||||| ||||| || || |||| ||| ||||| || | | |||||||| Sbjct 11399 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCCTTGTC 11340 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || || | | ||| || || | ||| || |||| |||||||| Sbjct 11339 CTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 11280 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| || ||||| || || || ||||| || Sbjct 11279 CTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244 >seq2543 Length=251032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || |||| ||| | |||| |||| || ||| || || || |||||||||| Sbjct 121583 CCACCCCTTAGACGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 121642 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| | |||| || ||||| || || || || ||||| | ||||||||||| || Sbjct 121643 ATAGTGCAGCCGTCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCGG-GGGG 121701 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||| ||| ||| || || | || | ||||| || | ||||| Sbjct 121702 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACC 121761 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 42206 || | ||||||||| |||||||| || ||||| | ||||| ||| Sbjct 121762 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCCCGAAGATCTGC 121806 >seq5058 Length=160646 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 57232 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 57173 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 57172 CTATACTAACGAGGA 57158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542824382477520