Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq393 127 2e-24 seq561 123 2e-23 seq18093 122 9e-23 seq17051 122 9e-23 seq10582 111 2e-19 seq1014 111 2e-19 seq2543 105 7e-18 seq3805 96.9 3e-15 seq3456 95.1 1e-14 seq1039 91.5 1e-13 seq5560 87.8 2e-12 seq6983 86.0 6e-12 seq1608 86.0 6e-12 seq204 82.4 8e-11 >seq393 Length=578971 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| ||||| ||||| Sbjct 168911 GTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 168970 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || ||||| || || || || || ||| Sbjct 168971 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 169030 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 169031 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 169090 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || |||||||| Sbjct 169091 TTCACAAAGATCTGCATTTT 169110 >seq561 Length=508305 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || | || |||||||||||||| || | Sbjct 125897 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGA 125838 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | |||||||| ||||| Sbjct 125837 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 125778 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || |||||| || | |||||| | || || || Sbjct 125777 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGAC 125718 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || |||||||| ||||| || Sbjct 125717 CTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667 >seq18093 Length=33488 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||| | | ||||| ||||| ||||| Sbjct 2830 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCT 2889 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || |||||||| || || || || ||| Sbjct 2890 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 2949 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | ||||||||| ||||| || Sbjct 2950 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 3009 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 3010 TTCACGAAGATCTGCATTTT 3029 >seq17051 Length=38469 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| || |||||||| ||| | || || | ||| ||||| ||||| Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || || || |||||| |||| |||||| || || || Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || |||||||| ||||| || Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244 >seq10582 Length=81843 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| ||| | || |||||||||||||| || | | || | | Sbjct 38527 TCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCC 38586 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | |||||||| |||||||||||||| || Sbjct 38587 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 38646 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || | || |||||| || | |||||| || || || || | ||| | Sbjct 38647 GTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 38706 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || |||| || || |||||||| ||||| || Sbjct 38707 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 38745 >seq1014 Length=401283 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| | || | || || ||||| || || || || |||| Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||| ||||| || |||| || ||||||||||| || || Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | |||| ||||| ||| ||| | || |||| || || || Sbjct 41613 ATGCCCTCCTTGTCTTGGA-TTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 41671 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | ||||||||| ||||| || || || || || ||||| Sbjct 41672 CTCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq2543 Length=251032 Score = 105 bits (116), Expect = 7e-18 Identities = 141/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | |||| ||||||| ||||| ||||| Sbjct 121613 GTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCT 121672 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| || || ||||| || || || || || ||| Sbjct 121673 GCAAAGATGAGCCTCTGCTGGTCGGG-GGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 121731 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 121732 ACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTC 121791 Query 64427 TTTACGAAAATTTGC 64441 || |||| || ||| Sbjct 121792 TTCCCGAAGATCTGC 121806 >seq3805 Length=195799 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | |||| | ||||| | ||| ||||| Sbjct 70989 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCATCTGTTTGCCT 70930 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | | ||||| ||||||||| || || || |||||||| || || || || ||| Sbjct 70929 GCAAAGAGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 70870 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| | | | || |||| || ||||| || || | |||||||| ||||| || Sbjct 70869 ACA---TTCTCGGTGTCACTGGGTTCCACCTCCGGGGTGATGGTCTTGCAGGTCAGGGTC 70813 Query 64427 TTTACGAAAATTTGCAT 64443 || | ||| || ||||| Sbjct 70812 TTCATGAAGATCTGCAT 70796 >seq3456 Length=207676 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| || |||| |||||| | | |||| | ||||| ||||| ||||| ||| | | Sbjct 50583 CTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGA 50642 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | |||| ||||||| | || || || ||||| || || || || || ||| || || Sbjct 50643 TAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCT 50702 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || |||| || ||||| || | || | |||||||||||||| || || |||| Sbjct 50703 CGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 50762 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 50763 AGATCTGCAT 50772 >seq1039 Length=395486 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| | || || ||||||| |||||| || | | | || | Sbjct 352046 TCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCC 351987 Query 64288 GTCTTCAAGCT-GCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTT 64346 ||||| || | ||||||| ||| | || || | |||||||| ||||||||||||| | Sbjct 351986 ATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTTCT 351927 Query 64347 TTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 | || || || || ||||||| || | || ||| || || || | | ||| | Sbjct 351926 TGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTTAAGAGTGA 351867 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || |||| || || |||||||| ||||| || Sbjct 351866 TGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 351827 >seq5560 Length=149305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || || |||||||||||||| || | | || || | ||||| Sbjct 93404 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 93345 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || |||||||| ||| | || || | |||||||| |||||||||||||| || || || Sbjct 93344 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 93285 Query 64355 ATTTTTTGCTTTACA-ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | || ||||||| || | || ||| || || || || | ||| | | | | Sbjct 93284 CTCTTGGCCTTTACATTTTTCTATTGCATCCGAGGGTTCAACCTCGAGAGTGATGCCCAT 93225 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || |||| || || | |||||| ||||| || Sbjct 93224 CCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 93192 >seq6983 Length=123737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTG-CGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 || || || |||||||||||||| || | ||| | || | || || || |||||||| Sbjct 100599 GTGGACTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGC-CATCCTCCAGTTGCTTGCC 100657 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || || | ||||||| ||||| ||||||||||| || || || || ||| Sbjct 100658 AGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTT 100717 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 |||| || | |||||| | || || | | ||| | |||||| || |||| || Sbjct 100718 TACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGT 100777 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || | |||||| ||||| || Sbjct 100778 CTTCATGAAAATCTGCATCTT 100798 >seq1608 Length=321383 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/219 (68%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| | || || |||||| |||| | || | | || || | Sbjct 105363 TCTCAACACAAGATGAAGACTGGACTCCTTTTGAGTGTTTTGGTCAGACAAAGTACGTCC 105422 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | |||||||| |||||||||||||| || Sbjct 105423 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 105482 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || ||||||| || |||||| || || || || | ||| | Sbjct 105483 ATCCTG-------GCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTGAT 105535 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || |||| || || |||||||| ||||| || Sbjct 105536 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 105574 >seq204 Length=711012 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| ||||| ||||| Sbjct 457422 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 457363 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 ||| | ||||||| ||||||||| || || || ||||| Sbjct 457362 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTC 457325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499287535231320