Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq393 127 2e-24
seq561 123 2e-23
seq18093 122 9e-23
seq17051 122 9e-23
seq10582 111 2e-19
seq1014 111 2e-19
seq2543 105 7e-18
seq3805 96.9 3e-15
seq3456 95.1 1e-14
seq1039 91.5 1e-13
seq5560 87.8 2e-12
seq6983 86.0 6e-12
seq1608 86.0 6e-12
seq204 82.4 8e-11
>seq393
Length=578971
Score = 127 bits (140), Expect = 2e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| ||||| || ||||||||||| | | ||||| | ||||| ||||| |||||
Sbjct 168911 GTCGAATCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 168970
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||||| ||||||||| || || || ||||| || || || || || |||
Sbjct 168971 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 169030
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || |||| || ||||| || | || | |||||||||||||| ||
Sbjct 169031 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 169090
Query 64427 TTTACGAAAATTTGCATTTT 64446
|| || || || ||||||||
Sbjct 169091 TTCACAAAGATCTGCATTTT 169110
>seq561
Length=508305
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| | ||| ||||||| || | || |||||||||||||| || |
Sbjct 125897 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGA 125838
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | ||||| || |||||||| ||| | || || | |||||||| |||||
Sbjct 125837 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 125778
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||||||| || || || || || |||||| || | |||||| | || || ||
Sbjct 125777 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGAC 125718
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | ||| | |||||| || |||| || || |||||||| ||||| ||
Sbjct 125717 CTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667
>seq18093
Length=33488
Score = 122 bits (134), Expect = 9e-23
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || ||||||||||| | | ||| | | ||||| ||||| |||||
Sbjct 2830 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCCAGCTGTTTGCCT 2889
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||||| ||||||||| || || || |||||||| || || || || |||
Sbjct 2890 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 2949
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| ||| | || |||| || ||||| || | || | ||||||||| ||||| ||
Sbjct 2950 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 3009
Query 64427 TTTACGAAAATTTGCATTTT 64446
|| ||||| || ||||||||
Sbjct 3010 TTCACGAAGATCTGCATTTT 3029
>seq17051
Length=38469
Score = 122 bits (134), Expect = 9e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| | ||| ||||||| || || || |||||||||||||| || |
Sbjct 11473 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 11414
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | ||||| || |||||||| ||| | || || | ||| ||||| |||||
Sbjct 11413 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGA 11354
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|||||||| || || || || || |||||| |||| |||||| || || ||
Sbjct 11353 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACC 11294
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | ||| | |||||| || |||| || || |||||||| ||||| ||
Sbjct 11293 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244
>seq10582
Length=81843
Score = 111 bits (122), Expect = 2e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||| ||||||| ||| | || |||||||||||||| || | | || | |
Sbjct 38527 TCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCC 38586
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| || |||||||| ||| | || || | |||||||| |||||||||||||| ||
Sbjct 38587 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 38646
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || | || |||||| || | |||||| || || || || | ||| |
Sbjct 38647 GTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 38706
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| || |||| || || |||||||| ||||| ||
Sbjct 38707 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 38745
>seq1014
Length=401283
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || |||| | |||||| | || | || || ||||| || || || || ||||
Sbjct 41493 CCACCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGAC 41552
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | || || ||||| ||||| || |||| || ||||||||||| || ||
Sbjct 41553 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGG 41612
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| | |||| ||||| ||| ||| | || |||| || || ||
Sbjct 41613 ATGCCCTCCTTGTCTTGGA-TTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 41671
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| ||| | ||||||||| ||||| || || || || || |||||
Sbjct 41672 CTCTAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACTAAGATCTGCAT 41719
>seq2543
Length=251032
Score = 105 bits (116), Expect = 7e-18
Identities = 141/195 (72%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || ||||||||||| | | |||| ||||||| ||||| |||||
Sbjct 121613 GTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTCTTCCAGCTGTTTGCCT 121672
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||||| |||||||||||| || || ||||| || || || || || |||
Sbjct 121673 GCAAAGATGAGCCTCTGCTGGTCGGG-GGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 121731
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | || |||| || ||||| || | || | ||||||||| |||| ||
Sbjct 121732 ACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTC 121791
Query 64427 TTTACGAAAATTTGC 64441
|| |||| || |||
Sbjct 121792 TTCCCGAAGATCTGC 121806
>seq3805
Length=195799
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/197 (71%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| ||||| || ||||||||||| | | |||| | ||||| | ||| |||||
Sbjct 70989 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCATCTGTTTGCCT 70930
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | | ||||| ||||||||| || || || |||||||| || || || || |||
Sbjct 70929 GCAAAGAGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 70870
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| | | | || |||| || ||||| || || | |||||||| ||||| ||
Sbjct 70869 ACA---TTCTCGGTGTCACTGGGTTCCACCTCCGGGGTGATGGTCTTGCAGGTCAGGGTC 70813
Query 64427 TTTACGAAAATTTGCAT 64443
|| | ||| || |||||
Sbjct 70812 TTCATGAAGATCTGCAT 70796
>seq3456
Length=207676
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313
|||| || |||| |||||| | | |||| | ||||| ||||| ||||| ||| | |
Sbjct 50583 CTTTCTGGATGTCGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCTGCAAAGA 50642
Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373
| |||| ||||||| | || || || ||||| || || || || || ||| || ||
Sbjct 50643 TAAGCCTCTGCTGGACAGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCT 50702
Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433
| | || |||| || ||||| || | || | |||||||||||||| || || ||||
Sbjct 50703 CGATGGTGTCACTGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGA 50762
Query 64434 AAATTTGCAT 64443
| || |||||
Sbjct 50763 AGATCTGCAT 50772
>seq1039
Length=395486
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/220 (70%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||| ||||||| | || || ||||||| |||||| || | | | || |
Sbjct 352046 TCTCAACACAAGATGAAGAGCGGACTCCTTTTGAACGTTGTAGTCAGACAAAATACGTCC 351987
Query 64288 GTCTTCAAGCT-GCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTT 64346
||||| || | ||||||| ||| | || || | |||||||| ||||||||||||| |
Sbjct 351986 ATCTTCCAGTTTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTTCT 351927
Query 64347 TTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406
| || || || || ||||||| || | || ||| || || || | | ||| |
Sbjct 351926 TGTCCTGGATCTTGGCCTTTACATTTTCTATTGCATCCGAGGGTTCGACCTTAAGAGTGA 351867
Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| || |||| || || |||||||| ||||| ||
Sbjct 351866 TGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 351827
>seq5560
Length=149305
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/213 (69%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||||| || || || |||||||||||||| || | | || || | |||||
Sbjct 93404 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 93345
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|| |||||||| ||| | || || | |||||||| |||||||||||||| || || ||
Sbjct 93344 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 93285
Query 64355 ATTTTTTGCTTTACA-ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
| || ||||||| || | || ||| || || || || | ||| | | | |
Sbjct 93284 CTCTTGGCCTTTACATTTTTCTATTGCATCCGAGGGTTCAACCTCGAGAGTGATGCCCAT 93225
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| |||| || || | |||||| ||||| ||
Sbjct 93224 CCCTGTCAGGGTCTTCAAGAAAATCTGCATATT 93192
>seq6983
Length=123737
Score = 86.0 bits (94), Expect = 6e-12
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTG-CGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305
|| || || |||||||||||||| || | ||| | || | || || || ||||||||
Sbjct 100599 GTGGACTCCTTTTGAATGTTGTAGTCAGACGAAGTATGGC-CATCCTCCAGTTGCTTGCC 100657
Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365
||| | || || | ||||||| ||||| ||||||||||| || || || || |||
Sbjct 100658 AGCAAAGATCAGTCTTTGCTGGTTAGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTT 100717
Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
|||| || | |||||| | || || | | ||| | |||||| || |||| ||
Sbjct 100718 TACATTTTCTATTGTATCTGAAGGTTCAACCTTGAGAGTGATGGTCTTCCCTGTCAGGGT 100777
Query 64426 TTTTACGAAAATTTGCATTTT 64446
|| | |||||| ||||| ||
Sbjct 100778 CTTCATGAAAATCTGCATCTT 100798
>seq1608
Length=321383
Score = 86.0 bits (94), Expect = 6e-12
Identities = 150/219 (68%), Gaps = 7/219 (3%)
Strand=Plus/Plus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||| ||||||| | || || |||||| |||| | || | | || || |
Sbjct 105363 TCTCAACACAAGATGAAGACTGGACTCCTTTTGAGTGTTTTGGTCAGACAAAGTACGTCC 105422
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| || |||||||| ||| | || || | |||||||| |||||||||||||| ||
Sbjct 105423 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 105482
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || ||||||| || |||||| || || || || | ||| |
Sbjct 105483 ATCCTG-------GCCTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCGAGAGTGAT 105535
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||| || |||| || || |||||||| ||||| ||
Sbjct 105536 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 105574
>seq204
Length=711012
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| ||||| || ||||||||||| | | ||||| | ||||| ||||| |||||
Sbjct 457422 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGTTTGCCT 457363
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344
||| | ||||||| ||||||||| || || || |||||
Sbjct 457362 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTC 457325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499287535231320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |