Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq561 91.5 1e-13 seq17051 89.7 5e-13 seq10582 82.4 8e-11 >seq561 Length=508305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 138422 ACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 |||||||||||||||||||||| || |||||| || || ||||| || || | | Sbjct 125862 ACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAA 125803 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| || | || ||||| ||||| || ||||| ||||| ||| || |||| | Sbjct 125802 AGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGT 125743 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 ||| | || ||| | || ||||||| || | || || || ||||| || || | Sbjct 125742 TTTCTATTGTATCGCAGGGTTCGACCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCA 125683 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 125682 CGAAAATCTGCAT 125670 >seq17051 Length=38469 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || ||||| || || | | Sbjct 11440 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 11381 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || |||| |||| || ||||| ||||| ||| || |||| Sbjct 11380 AAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTACG 11321 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||||| || || | | || ||||||| || | || || || ||||| || || Sbjct 11320 TTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTC 11261 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 11260 ACGAAAATCTGCAT 11247 >seq10582 Length=81843 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138422 ACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAAT 138481 |||||||||||||||||||||| || |||| | || || ||||| || || | | Sbjct 38550 ACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAA 38609 Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATT 138541 |||| || | || ||||| ||||| || ||||| ||||| || || |||| | Sbjct 38610 AGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGT 38669 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 ||| | || || | | || ||||||| || | || || || ||||| || || | Sbjct 38670 TTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCA 38729 Query 138602 CAAAAATCTGCAT 138614 | ||||||||||| Sbjct 38730 CGAAAATCTGCAT 38742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495907553774160