Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq561 109 4e-19 seq17051 96.9 2e-15 seq10582 86.0 4e-12 >seq561 Length=508305 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| || | || ||||| |||||||| || Sbjct 125896 CCACCACGAAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGAC 125837 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || ||||| ||| Sbjct 125836 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 125777 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| ||||| ||||||| ||||||| ||| || Sbjct 125776 ATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATTGTATCGCAGGGTTCGACC 125717 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || |||||||| || || || ||||| |||||||| Sbjct 125716 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATATT 125667 >seq17051 Length=38469 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 11474 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 11415 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | | ||||| | ||| |||||||| | |||| | || ||||| || Sbjct 11414 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGG 11355 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||||||| || ||| ||||| |||| || ||||| ||| || Sbjct 11354 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGAC 11295 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || || ||||| |||||||| Sbjct 11294 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 11244 >seq10582 Length=81843 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || || | |||||| || | || ||||| |||||||| || Sbjct 38516 CCACCATGAAGTCTCAACACAAGATGAAGCGTGAACTCCTTTTGAATGTTGTAGTCAGAC 38575 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | || | ||||| | ||| |||||||| | |||| | || ||||| || Sbjct 38576 AAAGTATGTC-CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 38634 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||||||| | ||| ||||| ||||||| ||||| ||| || Sbjct 38635 AATTCCTTCCTTGTCCTGGACCTTGGCCTTTACGTTTTCTATTGTATCCGAGGGTTCGAC 38694 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || || ||||| |||||||| Sbjct 38695 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 38745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357142840034855