Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq7377 165 1e-35
seq869 109 8e-19
>seq7377
Length=118119
Score = 165 bits (182), Expect = 1e-35
Identities = 171/224 (76%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || |||| |||||| || ||||||| || || || ||||| || ||||| || ||
Sbjct 31714 GTCTGGAACAGCTGCTCATCGTCCCATTCTGGATGCTCATGTTTAAGCACATCACACACT 31773
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| ||||| | |||||| || |||||||||||||| | ||| ||||||| ||||||
Sbjct 31774 CTGTTATGTTCCCGCAGCCAAATTGTGGCGTACATCATCAGACCAGGCACTAGACCAAAG 31833
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
||||| | |||||| ||||| ||||| | || || || | || | || | ||| |
Sbjct 31834 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGAACATGAGGGGGGTAGATCATCTCG 31893
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
||||| || |||||||| ||||| |||||||| || || ||||
Sbjct 31894 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCGCCACCAAT 31937
Score = 154 bits (170), Expect = 2e-32
Identities = 217/302 (72%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| | || || ||||| || ||||| || || ||||| |||||||| |
Sbjct 30035 AACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTGA 30094
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || | ||||| | |||||||| || || || || ||||| || ||||||||| |
Sbjct 30095 GGCAGTGGTGACGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTC 30154
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
|| || || || || |||| || ||||||||||| || || ||||| | || |
Sbjct 30155 AGGAGAACATATAGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCCCCAACTTCTAC 30214
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113
||| |||| || |||||||| | || || || ||||| || | |||| ||| || |
Sbjct 30215 CATGGTCTCCCCAAAGATGGCGTCCGGTCGAGGCTTTTCTACCA-GAAGAGCAGGATACA 30273
Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173
| || || || || | ||| |||||||| ||||| ||||| ||||| || |||||||| |
Sbjct 30274 GCTCCACGGCATCAATGTCACCATAGAGCGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 30333
Query 9174 CT 9175
||
Sbjct 30334 CT 30335
Score = 107 bits (118), Expect = 3e-18
Identities = 130/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| | | ||| || |||||||| ||||||||| ||| ||| | ||
Sbjct 32762 TCTTACCCCATGGCTCTGTCCCGTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 32821
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||||||||||||
Sbjct 32822 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 32881
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || | || | | || ||||| ||||||| | | ||||||| || ||
Sbjct 32882 AGGGATGAACTTTCTTCTTAGAAGTACTTTTTCCACAACTTCTTTTGAATCAGGAAG 32938
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | || || ||||||||| ||| || ||||| ||| ||| ||
Sbjct 33370 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAACTCTGGTG 33429
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATA 10490
|||||||| || || ||||| ||||||||||| || ||||| ||
Sbjct 33430 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCGTA 33473
>seq869
Length=425044
Score = 109 bits (120), Expect = 8e-19
Identities = 175/249 (70%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || | || ||||| | || ||||| || ||||| | |||||||||
Sbjct 408181 GTGGCCGTCTTGACAAGGTTGAAACCCATCTCACCGCCAAATGTGCTCGACTTCCAGTAC 408122
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || ||||| ||| | | ||| || || | |||||| |||||||| | ||
Sbjct 408121 TCCGGAGAACAGATAGGATTCCCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCAATTTCT 408062
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || ||||||| ||| | || || | || | |||| | |||
Sbjct 408061 ATCATACTCTCCCCAAAGATGGAGTTTGGAGGGCACTTCTCAA-GAAGCAGCCCTGGGTA 408003
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || |||| ||| ||||| || | |||||||| || || |||||||||||
Sbjct 408002 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 407943
Query 9172 ACCTACAAG 9180
||||||||
Sbjct 407942 TCCTACAAG 407934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723210507340200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |