Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq17051 145 2e-29
seq18093 140 7e-28
seq1014 118 2e-21
seq25372 102 2e-16
seq3805 102 2e-16
seq3799 102 2e-16
seq2392 98.7 2e-15
>seq17051
Length=38469
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| |
Sbjct 11464 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 11405
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| || ||||| || || ||||| |||| ||| |||| ||||||| |||||
Sbjct 11404 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCC 11345
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || ||| ||||| || || || ||||| ||| || || || ||
Sbjct 11344 TTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTG 11285
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || |||| || || ||||| | |||||
Sbjct 11284 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247
>seq18093
Length=33488
Score = 140 bits (154), Expect = 7e-28
Identities = 160/214 (75%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| ||||||||
Sbjct 2818 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCC 2877
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || ||||| ||||| || | || ||||| || || ||||||||||| || ||
Sbjct 2878 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 2937
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| |||||||| |||||||| ||| ||||| || ||||| | |||
Sbjct 2938 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2994
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| || ||||| || || ||||| | |||||||
Sbjct 2995 TTGCCAGTCAAGGTCTTCACGAAGATCTGCATTT 3028
>seq1014
Length=401283
Score = 118 bits (130), Expect = 2e-21
Identities = 151/207 (73%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||||||||| || ||||| || || | ||||| | ||||| || |||||
Sbjct 41516 GTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTCCAGCTG 41575
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || ||||| || || || || ||||| || || ||||| || |||||||| |||||
Sbjct 41576 TTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 41635
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113
||||| |||||||||||||| ||| || || || || || | ||||| ||
Sbjct 41636 AGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCTAGAGTGATGGTCTTGCC 41692
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || || || | |||||
Sbjct 41693 CGTCAAGGTCTTCACTAAGATCTGCAT 41719
>seq25372
Length=10183
Score = 102 bits (112), Expect = 2e-16
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| | ||| |||||||||||||| |||||| | ||||| || | | ||| |
Sbjct 9285 AGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGTACGT 9226
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| || ||||| || || || || | || ||| |||| | |||||| | ||
Sbjct 9225 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTGGTTAGAAGGAATTACATCC 9166
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| ||||| || || || || || || | || ||||| ||| || || || ||
Sbjct 9165 TTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCCAGAGTG 9106
Query 195103 ACCGTCTTTCCTGTCA 195118
| ||||| |||||||
Sbjct 9105 ATGGTCTTCCCTGTCA 9090
>seq3805
Length=195799
Score = 102 bits (112), Expect = 2e-16
Identities = 151/212 (71%), Gaps = 9/212 (4%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | ||||||||
Sbjct 71001 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 70942
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||| || ||||| |||| || | || ||||| || || ||||||||||| || ||
Sbjct 70941 ATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 70882
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || ||||| |||||| ||| |||||| || |||| | |||
Sbjct 70881 ATCTTGGCCTTCACATTCTC---GGTGTC---ACTGGGTTCCACCTCCGGGGTGATGGTC 70828
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | |||| || || | ||| | |||||
Sbjct 70827 TTGCAGGTCAGGGTCTTCATGAAGATCTGCAT 70796
>seq3799
Length=195891
Score = 102 bits (112), Expect = 2e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || ||||||| | |||||| | || |||||
Sbjct 103705 ACCAGGTGCAGGGTCGACTCTTTCTGGATGCTGTAATCAGAAAGAGTGCGGCCGTCTTCC 103646
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || ||||| ||||| || | || || || || || ||||||||||| || | |
Sbjct 103645 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGGGGGATGCCTTCTTTATCCTCA 103586
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || ||| | |||||| ||||||||
Sbjct 103585 ATCTTGGCCTTCATGTTCTCGATGGTGTC 103557
>seq2392
Length=260735
Score = 98.7 bits (108), Expect = 2e-15
Identities = 132/181 (73%), Gaps = 6/181 (3%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACA-AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
|||||||| | || |||||||||||||| |||||||| ||||| || | ||| |
Sbjct 4931 AGTCTCAACATTTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACA 4876
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|||||||| || ||| | || || ||||| |||| ||| ||||| |||||||| |||||
Sbjct 4875 TCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 4816
Query 195042 TTTGTCTTGAATTTTTTGCTTGAC-GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGG 195100
|| || || || || ||| || || || | || || || ||| |||||||| |
Sbjct 4815 CTTATCCTGGATCTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAG 4756
Query 195101 T 195101
|
Sbjct 4755 T 4755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108668446026701
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |