Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq17051 145 2e-29 seq18093 140 7e-28 seq1014 118 2e-21 seq25372 102 2e-16 seq3805 102 2e-16 seq3799 102 2e-16 seq2392 98.7 2e-15 >seq17051 Length=38469 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 11464 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 11405 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| |||| ||||||| ||||| Sbjct 11404 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCCGGTCGAGAGGAATTCCTTCC 11345 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||| ||||| || || || ||||| ||| || || || || Sbjct 11344 TTGTCCTGGATCTTGGCCTTTACGTTTTCCATTGTATCCGAGGGTTCGACCTCGAGAGTG 11285 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || |||| || || ||||| | ||||| Sbjct 11284 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 11247 >seq18093 Length=33488 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| |||||||| Sbjct 2818 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGTGGCCATCTTCC 2877 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| || | || ||||| || || ||||||||||| || || Sbjct 2878 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 2937 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 2938 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2994 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| | ||||||| Sbjct 2995 TTGCCAGTCAAGGTCTTCACGAAGATCTGCATTT 3028 >seq1014 Length=401283 Score = 118 bits (130), Expect = 2e-21 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || ||||| || || | ||||| | ||||| || ||||| Sbjct 41516 GTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTGCGGCCATCCTCCAGCTG 41575 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || || || || ||||| || || ||||| || |||||||| ||||| Sbjct 41576 TTTGCCCGCGAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 41635 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||||||||||| ||| || || || || || | ||||| || Sbjct 41636 AGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCTAGAGTGATGGTCTTGCC 41692 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | ||||| Sbjct 41693 CGTCAAGGTCTTCACTAAGATCTGCAT 41719 >seq25372 Length=10183 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| | ||| |||||||||||||| |||||| | ||||| || | | ||| | Sbjct 9285 AGTCTCAACAGAAGATGAAGAGTGGACTCCTTTTGACTGTTGTAGTCAGACAAAGTACGT 9226 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || || || | || ||| |||| | |||||| | || Sbjct 9225 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTTTGCTGGTTAGAAGGAATTACATCC 9166 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || || || || || | || ||||| ||| || || || || Sbjct 9165 TTATCTTGGATCTTGGCGTTTACATTTTCTGTTGTATCCGAGGGTTCGACCTCCAGAGTG 9106 Query 195103 ACCGTCTTTCCTGTCA 195118 | ||||| ||||||| Sbjct 9105 ATGGTCTTCCCTGTCA 9090 >seq3805 Length=195799 Score = 102 bits (112), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 71001 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 70942 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || ||||| |||| || | || ||||| || || ||||||||||| || || Sbjct 70941 ATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 70882 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||| ||| |||||| || |||| | ||| Sbjct 70881 ATCTTGGCCTTCACATTCTC---GGTGTC---ACTGGGTTCCACCTCCGGGGTGATGGTC 70828 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||| || || | ||| | ||||| Sbjct 70827 TTGCAGGTCAGGGTCTTCATGAAGATCTGCAT 70796 >seq3799 Length=195891 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||||| | |||||| | || ||||| Sbjct 103705 ACCAGGTGCAGGGTCGACTCTTTCTGGATGCTGTAATCAGAAAGAGTGCGGCCGTCTTCC 103646 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| || | || || || || || ||||||||||| || | | Sbjct 103645 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGATCAGGGGGGATGCCTTCTTTATCCTCA 103586 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| | |||||| |||||||| Sbjct 103585 ATCTTGGCCTTCATGTTCTCGATGGTGTC 103557 >seq2392 Length=260735 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACA-AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||||| | || |||||||||||||| |||||||| ||||| || | ||| | Sbjct 4931 AGTCTCAACATTTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTACA 4876 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||| | || || ||||| |||| ||| ||||| |||||||| ||||| Sbjct 4875 TCCATCTTCCAGTTGCCTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 4816 Query 195042 TTTGTCTTGAATTTTTTGCTTGAC-GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGG 195100 || || || || || ||| || || || | || || || ||| |||||||| | Sbjct 4815 CTTATCCTGGATCTTGACCTTTACATTTTTCTGTTGTATCTGAGGGTTCAACTTCAAGAG 4756 Query 195101 T 195101 | Sbjct 4755 T 4755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108668446026701