Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1525 367 1e-96 seq36034 269 3e-67 seq549 123 3e-23 seq1670 120 3e-22 seq41499 107 2e-18 seq3603 107 2e-18 >seq1525 Length=329219 Score = 367 bits (406), Expect = 1e-96 Identities = 643/929 (69%), Gaps = 10/929 (1%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || || |||||||| Sbjct 305224 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CAKCACTCCCAT 305168 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 305167 CYTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 305108 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| ||||||||||||| ||| | | || | || || | || | | Sbjct 305107 CTCCATAAAGTCAAATGGATTTTCTACTCAGAAAACCTTGCTAAAACCCAGCTCCAGCAT 305048 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || | ||||| || || ||||||| | |||||||||| || || | Sbjct 305047 AAGTCTGTCTGCCAGGAATTTGATGTACTGCTTCATCAAAGCACAATTCATCCCGATGAG 304988 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907 || || | | || || || || || ||||||| | ||||| |||| || | Sbjct 304987 CTTCACTGTTGAGGCCTCCGTGAGGCGCTCCTGTTCTAGCCTAACTGCA-CTGACGATTA 304929 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | ||||| | || ||| || ||| || ||||| ||||||| || |||| Sbjct 304928 TTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAA 304869 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | |||||| |||||||| | || |||| Sbjct 304868 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCA 304809 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||||| ||| || | ||||||||| || ||||| || ||||||||||| || |||| Sbjct 304808 TCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTT 304749 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | ||||| ||||| || | | | ||||||||| |||| || | | | ||||| Sbjct 304748 CCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAGCCTCTGTGTCCTCGATCCAGC 304689 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || |||||||| |||||||| |||||||| ||||||||||| || | || || ||| Sbjct 304688 GCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATGGCGTTGAAGAGAG 304629 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | || | | ||||||||| || | || | | | ||| |||||||| |||| Sbjct 304628 ATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGAGGAGACTATACATTTCCGAAT 304569 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || || || || || || || ||| | ||||| || ||||| ||| Sbjct 304568 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCACGGGCTTCCGTCATCTGAGCTT 304509 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | || | || |||| |||||||| |||| |||||||| |||||| | || | Sbjct 304508 CTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGCCATCACTTGCTGCAGAGAAAG 304449 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATA 19446 | | ||||| ||| |||||| | || || | | || | | || || | | ||| Sbjct 304448 CCAGGACATGCGAAATGAAATGTCTCTCCTCAG-GCTTCAGGGCTTCCCGGTGCTGAATG 304390 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || | || | || || || ||| | ||||| | |||||||| || | ||| |||| Sbjct 304389 TCCTAGGAAAGGTCCACCTCCTCAGCCGTCCAGCAGGAAGCCTCAGCGTGCTTACACATC 304330 Query 19507 TTCCATATATCACGATATTGTATAGGAAA 19535 | ||| | |||||| |||| |||||||| Sbjct 304329 TGCCAAACATCACGGTATTCGATAGGAAA 304301 >seq36034 Length=1448 Score = 269 bits (298), Expect = 3e-67 Identities = 423/599 (71%), Gaps = 11/599 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||| ||| Sbjct 608 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCTCAT 552 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || ||| |||| ||||| || || || | ||| ||| Sbjct 551 CCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 492 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||||| ||||||||||||| ||| | | | || | || || | || | | Sbjct 491 CCCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCAT 432 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || ||||||| || || ||||||| | |||||||| || || | Sbjct 431 AAGTCTGTCTGCCACAAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAG 372 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAA 18907 || || || || || || || || || || |||||||| | ||||| | ||| || | Sbjct 371 CTTCACTGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT-TGACGATTA 313 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | ||||| | || ||| || ||| || ||||| ||||||| || |||| Sbjct 312 TTTCTTTGACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAA 253 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| ||||||||||| || || | |||||| |||||||| | | |||| Sbjct 252 AGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCTGGGCA 193 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 |||| |||| |||||| | ||||||||| || ||||| || ||||||||| || |||| Sbjct 192 TCAGACCTCGTTTTTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG---ATTCCTT 136 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | ||||| |||| || | | | ||||||||| |||| || || | ||||| Sbjct 135 CCACTGCAACAAAGGCTGCGACACGTTCTCCATACGTAGCCTCTTTGTCCCCGATCCAGC 76 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || |||||||| | |||||| |||||||| ||||||||||| |||| || || ||| Sbjct 75 ACAAGGCCCAATCTGTCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGA 17 >seq549 Length=511996 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| |||||||| | || |||||||| |||| ||||| Sbjct 260455 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTT 260514 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 260515 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 260574 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 260575 CTACGACACGTTCTCC 260590 >seq1670 Length=315515 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 206376 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 206435 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 206436 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 206495 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 206496 ACCACCCTTTCCCC 206509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 184375 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 184434 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 184435 ATAAAATCAAAGGGATTTT 184453 >seq41499 Length=968 Score = 107 bits (118), Expect = 2e-18 Identities = 187/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 ||| || ||| ||||||| | ||| ||||||||| || | | || ||| |||||||| Sbjct 962 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTGGA---CATCACTCCCAT 906 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 905 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATT 846 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||| ||||||||||||| ||| | | | || | || || | || | | Sbjct 845 CTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGCTCCAGCAT 786 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || || |||| || || ||||||| | |||||||| || || | Sbjct 785 AAGTCTGTCTGCCACRAATTCGATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAG 726 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTC 18878 || || || || || || || || || || Sbjct 725 CTTCACTGGCAGGGCTTCCGTGAGGAACTC 696 >seq3603 Length=202440 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 28557 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 28498 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 28497 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAACTG 28438 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 28437 TTTCTTATACCATA 28424 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/171 (71%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 30792 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 30733 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| || |||||| |||| | || Sbjct 30732 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCC--ATCTTGAGTACGGT 30675 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 || || | || ||||| || || ||||||| ||| || | ||| || || Sbjct 30674 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 30624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561706871128920