Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq10197 127 3e-24 seq8395 98.7 1e-15 >seq10197 Length=85643 Score = 127 bits (140), Expect = 3e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || | ||||| || |||| | ||| ||| ||| ||||| Sbjct 77823 ACTGAGGAACTTACAAGTTGTCCCTCACACCAAATGGTCTAAAAATAGGACCTGTGAGAT 77882 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||||| ||| |||| ||||| ||||||| |||| ||| ||| || Sbjct 77883 CCACCTGACCTGCTCTGTGGAGAATCCAAATGATAACATCTTATTCAGGTGGCAGGTCTC 77942 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || ||| | | || | |||||||| | |||||||||||||| || | Sbjct 77943 AGGAAACACACTTGAAAGTGAAGCAAACCTCACTATCTCCTGGGACCCCAAGAGTTTCGA 78002 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||| | || || || |||| |||||| || ||| | ||||| Sbjct 78003 TGAAGAGACCTACACCTGCGTAGCTGAGAATCCTGTCAGCAATTCATCCTTCTCTGTCTC 78062 Query 2447 GGCCCAGA 2454 | ||||| Sbjct 78063 TGTCCAGA 78070 Score = 104 bits (114), Expect = 3e-17 Identities = 222/327 (68%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| |||| ||||| ||||| | |||||||| |||||| Sbjct 66615 GTTTCACAAACCAGCTCAACCCCATTGATTGTGAACGGGGTCGTGGGGGAGTCTGTAACA 66674 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || ||||| | | ||| | || |||||||||| |||||||||||||| | | || Sbjct 66675 CTTACCCTGAAGTCTCCTGTGGAAGAGAAGATCATGTCCATCACCTGGCTTCATGATGGA 66734 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGC-CAAGAGCCCCCAGATCCACCTAACCAA 2056 | || ||| ||| || | || || || | | | ||| || | |||| Sbjct 66735 AAATCTATCATCTTCATAGAGCCAAATGAAGCACTAAA-----CAGGGTGACTGACCCAA 66789 Query 2057 TCCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCT 2116 || || || ||| | || |||| ||||||||||| | || || |||||||| Sbjct 66790 AGCGGAA-----AAATCGATTGAAGGTCACCAAGTCCTACTCCTTGCAGCTCAGCAACCT 66844 Query 2117 AGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAAC-G 2175 ||||| |||||| || | ||||| |||| ||| || | |||| | || || | Sbjct 66845 GACGATGGCAGACACAGGAACTTACAGCGCCCAGATAACCACACTGACCTC--TTCACTG 66902 Query 2176 TT-TCCAGCTACACGCTGAGGATCTTC 2201 || |||| || |||||||||||| Sbjct 66903 TTCACCAGTTATGATCTGAGGATCTTC 66929 >seq8395 Length=104985 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||| ||||| || |||||||| |||| Sbjct 46398 GTTTCACAAATCAGCTCAACCCCATTGATTGTGAACGGGGTCCTGGGGGAGTCTATAACT 46457 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGC 1986 || ||||| | ||||| | || |||||||||| |||||||||||||| Sbjct 46458 CTTACCCTGAAGTTTCCTGTGGAAGAGAAGATCATGTCCATCACCTGGC 46506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628833238913880