Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq1525 192 7e-44
seq25410 123 3e-23
seq549 111 2e-19
seq1670 107 2e-18
seq41499 82.4 9e-11
>seq1525
Length=329219
Score = 192 bits (212), Expect = 7e-44
Identities = 328/473 (69%), Gaps = 2/473 (0%)
Strand=Plus/Minus
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
||| |||| | || ||||| ||||| |||||||| || ||||| || || | ||||||
Sbjct 304888 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATT 304829
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
||||| || | || ||||| | |||| ||| || | ||| ||||| | |||||||||
Sbjct 304828 GGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGA 304769
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
||||||||||| || ||||| ||||| ||||| |||| | |||| || | || |
Sbjct 304768 ACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAG- 304710
Query 37343 ACTAT-AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401
|| | || ||||| | |||||||||||| || ||||| ||||
Sbjct 304709 CCTCTGTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 304650
Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461
| ||||| || || |||||| | | |||||| |||| | | ||||| ||| | |
Sbjct 304649 TCTCAATGGCGTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGA 304590
Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521
| | |||||||||||| || || || ||||| || || || || || ||||| ||| |
Sbjct 304589 GGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCAC 304530
Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581
||||| | | ||| | || | || || || | | ||||||||| |||| |
Sbjct 304529 GGGCTTCCGTCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGC 304470
Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
||||||| |||||| ||||||| || |||| || |||||||| || |||
Sbjct 304469 CATCACTTGCTGCAGAGAAAGCCAGGACATGCGAAATGAAATGTCTCTCCTCA 304417
>seq25410
Length=10104
Score = 123 bits (136), Expect = 3e-23
Identities = 206/295 (70%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525
||||||||||||||| || || ||||| || || || || || ||||| ||||| ||
Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041
Query 37526 TTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584
||| | |||| ||||| || | ||||| || | ||| ||||||| ||||| ||||
Sbjct 10040 TTCCG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCAT 9982
Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644
|||| |||||||||||||| ||||||| || |||| ||| || ||| |
Sbjct 9981 CACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGG 9922
Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCA 37704
|| ||| | | ||| || || || | || || || ||| | |||||||| |||
Sbjct 9921 CTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862
Query 37705 ATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759
|| ||||||||| ||||||||||| | || || ||||| || |||||
Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807
>seq549
Length=511996
Score = 111 bits (122), Expect = 2e-19
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|| ||||| || || | |||||| ||||| || | || ||||| | ||||| ||||||
Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| |||
Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 260576
Query 37320 ACAAGACGT 37328
|| | ||||
Sbjct 260577 ACGACACGT 260585
>seq1670
Length=315515
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||| ||||| | |||||||| |
Sbjct 206374 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 206433
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 206434 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 206493
Query 37318 CTAC 37321
| ||
Sbjct 206494 CCAC 206497
>seq41499
Length=968
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||| ||||
Sbjct 917 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 859
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||||||
Sbjct 858 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591893271276120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |