Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1525 192 7e-44 seq25410 123 3e-23 seq549 111 2e-19 seq1670 107 2e-18 seq41499 82.4 9e-11 >seq1525 Length=329219 Score = 192 bits (212), Expect = 7e-44 Identities = 328/473 (69%), Gaps = 2/473 (0%) Strand=Plus/Minus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||| ||||| |||||||| || ||||| || || | |||||| Sbjct 304888 TTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCGTCTCTGCTAATAAGTTCATT 304829 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| Sbjct 304828 GGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGA 304769 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| ||||| ||||| |||| | |||| || | || | Sbjct 304768 ACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTATGACACGTTCTCCATACGTAG- 304710 Query 37343 ACTAT-AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401 || | || ||||| | |||||||||||| || ||||| |||| Sbjct 304709 CCTCTGTGTCCTCGATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 304650 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | ||||| || || |||||| | | |||||| |||| | | ||||| ||| | | Sbjct 304649 TCTCAATGGCGTTGAAGAGAGATTCCCTTTCTTTGGAATCTTTAACGTAAGTGTCATTGA 304590 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | | |||||||||||| || || || ||||| || || || || || ||||| ||| | Sbjct 304589 GGAGACTATACATTTCCGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAATCAC 304530 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||| | | ||| | || | || || || | | ||||||||| |||| | Sbjct 304529 GGGCTTCCGTCATCTGAGCTTCTTGGCTAAGCCGCTCCACCAGGTTTTCATTTACTACGC 304470 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||| |||||| ||||||| || |||| || |||||||| || ||| Sbjct 304469 CATCACTTGCTGCAGAGAAAGCCAGGACATGCGAAATGAAATGTCTCTCCTCA 304417 >seq25410 Length=10104 Score = 123 bits (136), Expect = 3e-23 Identities = 206/295 (70%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||||||||||||||| || || ||||| || || || || || ||||| ||||| || Sbjct 10100 ACTATACATTTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAATGGGC 10041 Query 37526 TTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 ||| | |||| ||||| || | ||||| || | ||| ||||||| ||||| |||| Sbjct 10040 TTCCG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGCTTTCATTTACTATGCCAT 9982 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644 |||| |||||||||||||| ||||||| || |||| ||| || ||| | Sbjct 9981 CACTTGCTGCAAAGAAAGCCAGAACATGCGAAATGAAATATCTCTCCTCAGGCTTCAGGG 9922 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCA 37704 || ||| | | ||| || || || | || || || ||| | |||||||| ||| Sbjct 9921 CTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCTTCAGCTGTCCAAAAGGAAGCCT 9862 Query 37705 ATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || ||||||||| ||||||||||| | || || ||||| || ||||| Sbjct 9861 CAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 9807 >seq549 Length=511996 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 || ||||| || || | |||||| ||||| || | || ||||| | ||||| |||||| Sbjct 260457 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGACCTCGTTTTTTG 260516 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 260517 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 260576 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 260577 ACGACACGT 260585 >seq1670 Length=315515 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||||| | Sbjct 206374 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 206433 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 206434 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 206493 Query 37318 CTAC 37321 | || Sbjct 206494 CCAC 206497 >seq41499 Length=968 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 917 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 859 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 858 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591893271276120