Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09]
57,203 sequences; 2,849,453,582 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq18172 325 3e-84
seq15026 187 2e-42
seq293 143 2e-29
seq1907 102 7e-17
seq721 96.9 3e-15
seq17849 82.4 6e-11
seq5426 82.4 6e-11
>seq18172
Length=33122
Score = 325 bits (360), Expect = 3e-84
Identities = 517/743 (70%), Gaps = 5/743 (1%)
Strand=Plus/Minus
Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29769
|| || || ||||| ||||| || | ||||| || | | || || || ||||
Sbjct 27535 AAGTCTTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGG 27476
Query 29770 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACG 29829
|| || || || || | || |||||| | |||||||| || | ||||| |||||| | |
Sbjct 27475 AAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATG 27416
Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889
|| || ||||||| ||||| ||||| || || || | || | ||| ||| || |||
Sbjct 27415 TGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTGCGATC 27356
Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949
||||| | || | ||||||||||||| | ||||| || | || |||||||| ||
Sbjct 27355 ATGTA-----GCAGGGCGTAGCTGGCGATGYTGAAGGGCACACYCAGGCCCATGTCTCCT 27301
Query 29950 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009
||||||||||| ||||| || || ||||| |||| |||||| ||||| || | || |
Sbjct 27300 GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCG 27241
Query 30010 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 30069
|||||||| || || |||||||| | ||||| || ||||| || |||| ||||||
Sbjct 27240 TGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTCGGATTCCAAGCACACAGGATGATT 27181
Query 30070 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 30129
| ||||| || |||||| | |||| ||| | |||||||| ||||| || ||
Sbjct 27180 CTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCT 27121
Query 30130 ATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAAC 30189
| || || |||| ||| || |||| || | || |||||||||||||| ||
Sbjct 27120 TGATCTGAATAATCTGAATGCATATCTTTGTATTCGGTCCCAAAATGCCTCCACTGAAAG 27061
Query 30190 CCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAG 30249
|| || || || || | || || ||| | ||| ||| ||| ||||||| |||
Sbjct 27060 CCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAG 27001
Query 30250 TCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTT 30309
|||| ||| || ||||| |||||||| || || ||||| || ||||| || | ||||
Sbjct 27000 TCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTT 26941
Query 30310 GTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTG 30369
||||| || ||| |||||||||| ||||||| || |||| || || || | |||
Sbjct 26940 GTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACATTTG 26881
Query 30370 GTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGAC 30429
|| || || || ||||| | | | |||| ||| ||||| || ||||| |||
Sbjct 26880 GTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGAC 26821
Query 30430 AAGACTCCCGTGCCCGTCCTGTC 30452
| | || |||||||| | |||
Sbjct 26820 AGGGTGCCGGTGCCCGTGCGGTC 26798
>seq15026
Length=49095
Score = 187 bits (206), Expect = 2e-42
Identities = 374/551 (68%), Gaps = 10/551 (2%)
Strand=Plus/Plus
Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850
||||| | |||||| | || | |||||||||||| | ||| || ||||||| |||||
Sbjct 46639 AGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 46698
Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910
||| | || || || | || || |||| ||| || |||||||| ||||| || | |||
Sbjct 46699 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAG 46758
Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970
||||||| ||| |||| || || || ||| |||| || ||||||||||| ||||| ||
Sbjct 46759 CTGGCGACGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACCTCTGGTACAGCTG-CAG 46817
Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAG------- 30023
|| ||||| || |||||| || || || | || |||||| | || ||
Sbjct 46818 GACAGCTCATGGTTCACCACGTAGAAGTGGCAAAAGGCATGGCACAGGGGCAGGGTGGCA 46877
Query 30024 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30083
| ||||| | ||||| | ||||| || || | ||||| | |||||||| ||
Sbjct 46878 GGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 46936
Query 30084 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA-GT 30142
|||| | |||| ||| | | |||||||| || || || || | || || |
Sbjct 46937 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACGTGAATACAT 46996
Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202
| || || |||| || || | ||| |||||||||| || | || || || |
Sbjct 46997 TTAAATCCACATCTTTGTATTCAGCCACCAAAGGCCTCCACTGAAAGCTATAAACTGGGC 47056
Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262
| | || || ||||| ||| || || ||||||| ||||||| ||| ||||
Sbjct 47057 CTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCCGT 47116
Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322
||| |||||||| || || ||||| || ||||| || | |||||||| || |||
Sbjct 47117 GGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTTGA 47176
Query 30323 CGAACCACAGC 30333
|||||||||
Sbjct 47177 TCAACCACAGC 47187
>seq293
Length=643942
Score = 143 bits (158), Expect = 2e-29
Identities = 130/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| ||||| || | ||||||||||||||| |||||
Sbjct 264058 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 263999
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || ||||||||||| ||||| || || ||||| |||| |
Sbjct 263998 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 263939
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
| ||| ||||| || | || ||||||||| || || ||||||||
Sbjct 263938 ATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 263895
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || || || |||||||||||||| || || || || || || | ||
Sbjct 260792 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 260733
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| ||
Sbjct 260732 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 260673
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 260672 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 260625
>seq1907
Length=295643
Score = 102 bits (112), Expect = 7e-17
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 59916 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 59857
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| || || |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 59856 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 59797
Query 112200 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231
||| || || |||| ||||||| || | |||||
Sbjct 59796 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 59765
>seq721
Length=458371
Score = 96.9 bits (106), Expect = 3e-15
Identities = 178/259 (69%), Gaps = 8/259 (3%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || ||||| |||| || || ||| | |
Sbjct 192700 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGCCCTT 192641
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| || || |||||||| |||||| ||
Sbjct 192640 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 192581
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259
||| || ||| |||||||| || | ||||| | | || | | | || || |
Sbjct 192580 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCT 192521
Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318
|| || |||| ||||| || ||||| || || |||||| || ||||| |||
Sbjct 192520 GAG------CGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCGTGTTCTGG-GACA 192468
Query 112319 CGGCCACGATACCGTTCAG 112337
| || ||||| | ||| ||
Sbjct 192467 CAGCGACGATGCAGTTTAG 192449
>seq17849
Length=34736
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 9034 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9093
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| || || |||||||| ||||||| ||||| || |||
Sbjct 9094 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9141
>seq5426
Length=152180
Score = 82.4 bits (90), Expect = 6e-11
Identities = 114/157 (73%), Gaps = 6/157 (4%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || |||| |||| || || ||||| ||
Sbjct 82213 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCT 82154
Query 112140 CAGAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCA 112195
| ||||| |||||| | || ||| |||||||| || || |||||||| |||||||
Sbjct 82153 TAAAGGTCGATTCTTCTGTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCA 82094
Query 112196 CGTTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231
||||| || || |||| ||||| | || | |||||
Sbjct 82093 AATTCTGTTTACCTTCTG-CTGAAAAGGTTGTGGTCA 82058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408332727515519
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |