Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eschrichtius_20robustus_20[genbank_20GCA_5F002189225.1_202017-06-09] 57,203 sequences; 2,849,453,582 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq18172 325 3e-84 seq15026 187 2e-42 seq293 143 2e-29 seq1907 102 7e-17 seq721 96.9 3e-15 seq17849 82.4 6e-11 seq5426 82.4 6e-11 >seq18172 Length=33122 Score = 325 bits (360), Expect = 3e-84 Identities = 517/743 (70%), Gaps = 5/743 (1%) Strand=Plus/Minus Query 29710 AAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGA 29769 || || || ||||| ||||| || | ||||| || | | || || || |||| Sbjct 27535 AAGTCTTCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTCTGAGCTTGGGG 27476 Query 29770 AAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACG 29829 || || || || || | || |||||| | |||||||| || | ||||| |||||| | | Sbjct 27475 AAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTCAGCGGCTCAATGTGATTCAGGTAAATG 27416 Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889 || || ||||||| ||||| ||||| || || || | || | ||| ||| || ||| Sbjct 27415 TGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCGCGTGGTGTGTGCGATC 27356 Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949 ||||| | || | ||||||||||||| | ||||| || | || |||||||| || Sbjct 27355 ATGTA-----GCAGGGCGTAGCTGGCGATGYTGAAGGGCACACYCAGGCCCATGTCTCCT 27301 Query 29950 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009 ||||||||||| ||||| || || ||||| |||| |||||| ||||| || | || | Sbjct 27300 GACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCG 27241 Query 30010 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATG 30069 |||||||| || || |||||||| | ||||| || ||||| || |||| |||||| Sbjct 27240 TGGCACGGGGGTAGGGCCATGAGAGGGAGATCTTTCGGATTCCAAGCACACAGGATGATT 27181 Query 30070 CGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCC 30129 | ||||| || |||||| | |||| ||| | |||||||| ||||| || || Sbjct 27180 CTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTCACTTTTTGCAGTTGATCTACTCCT 27121 Query 30130 ATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAAC 30189 | || || |||| ||| || |||| || | || |||||||||||||| || Sbjct 27120 TGATCTGAATAATCTGAATGCATATCTTTGTATTCGGTCCCAAAATGCCTCCACTGAAAG 27061 Query 30190 CCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAG 30249 || || || || || | || || ||| | ||| ||| ||| ||||||| ||| Sbjct 27060 CCATAAACTGGGCCTAAATCCCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAG 27001 Query 30250 TCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTT 30309 |||| ||| || ||||| |||||||| || || ||||| || ||||| || | |||| Sbjct 27000 TCTCGGGACCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTT 26941 Query 30310 GTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTG 30369 ||||| || ||| |||||||||| ||||||| || |||| || || || | ||| Sbjct 26940 GTGGATCCCTTGATAAACCACAGCAACTCCTCCGAAACACCCTTGCAGAAAACACATTTG 26881 Query 30370 GTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACACGGAC 30429 || || || || ||||| | | | |||| ||| ||||| || ||||| ||| Sbjct 26880 GTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCATGCCGAACACCGAC 26821 Query 30430 AAGACTCCCGTGCCCGTCCTGTC 30452 | | || |||||||| | ||| Sbjct 26820 AGGGTGCCGGTGCCCGTGCGGTC 26798 >seq15026 Length=49095 Score = 187 bits (206), Expect = 2e-42 Identities = 374/551 (68%), Gaps = 10/551 (2%) Strand=Plus/Plus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| | |||||| | || | |||||||||||| | ||| || ||||||| ||||| Sbjct 46639 AGCTGCATTTTCAGCAGCTCAATGTGATCCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 46698 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 ||| | || || || | || || |||| ||| || |||||||| ||||| || | ||| Sbjct 46699 ACAGAGTCACCTGGCTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAG 46758 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||||| ||| |||| || || || ||| |||| || ||||||||||| ||||| || Sbjct 46759 CTGGCGACGTTGAAGGACACACCCAGGCCCCTGTCTCCTGACCTCTGGTACAGCTG-CAG 46817 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAG------- 30023 || ||||| || |||||| || || || | || |||||| | || || Sbjct 46818 GACAGCTCATGGTTCACCACGTAGAAGTGGCAAAAGGCATGGCACAGGGGCAGGGTGGCA 46877 Query 30024 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30083 | ||||| | ||||| | ||||| || || | ||||| | |||||||| || Sbjct 46878 GGGTATGAGAGGAAGATCTTT-TGATTCCAAGCACATAGAATGATTCTTCTGTCTTCAGG 46936 Query 30084 GTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA-GT 30142 |||| | |||| ||| | | |||||||| || || || || | || || | Sbjct 46937 GTTGGTTTTGATTGTGTCAATCACCTTTTGCAGTTGGTCTACTCCTTGACGTGAATACAT 46996 Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 | || || |||| || || | ||| |||||||||| || | || || || | Sbjct 46997 TTAAATCCACATCTTTGTATTCAGCCACCAAAGGCCTCCACTGAAAGCTATAAACTGGGC 47056 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 | | || || ||||| ||| || || ||||||| ||||||| ||| |||| Sbjct 47057 CTAAATCCCCTTCTTCTCTGGTGGAGAGTACCAGGCTGTCCAAGAAGTCTCGGGACCCGT 47116 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||| |||||||| || || ||||| || ||||| || | |||||||| || ||| Sbjct 47117 GGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGAGCCCTTGA 47176 Query 30323 CGAACCACAGC 30333 ||||||||| Sbjct 47177 TCAACCACAGC 47187 >seq293 Length=643942 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| Sbjct 264058 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 263999 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 263998 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 263939 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 | ||| ||||| || | || ||||||||| || || |||||||| Sbjct 263938 ATGTAGAACTGGCAAAGGGCGTGGCACGGGGGTAGGGCCATGAG 263895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || |||||||||||||| || || || || || || | || Sbjct 260792 CATATCTTTGTATTCGGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATC 260733 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||| | ||| ||| ||| ||||||| ||||||| ||| || ||||| || Sbjct 260732 CCCTTCTGCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATC 260673 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 260672 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 260625 >seq1907 Length=295643 Score = 102 bits (112), Expect = 7e-17 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 59916 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 59857 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | || || |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 59856 TAAAGATCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 59797 Query 112200 CTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231 ||| || || |||| ||||||| || | ||||| Sbjct 59796 CTGTTTACCTTCTG-CTGAAGAAGTTGTGGTCA 59765 >seq721 Length=458371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||| | | Sbjct 192700 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGCCCTT 192641 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| || || |||||||| |||||| || Sbjct 192640 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCATGTTTTCCTACCCATAATCACCGAATT 192581 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || ||| |||||||| || | ||||| | | || | | | || || | Sbjct 192580 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCATTCCT 192521 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 || || |||| ||||| || ||||| || || |||||| || ||||| ||| Sbjct 192520 GAG------CGGGGGCCAGGGCAGGTCCCCGTTCTTGCCAATGCCCGTGTTCTGG-GACA 192468 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 192467 CAGCGACGATGCAGTTTAG 192449 >seq17849 Length=34736 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 9034 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 9093 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 9094 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAAATTCTGTTTACCT 9141 >seq5426 Length=152180 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || |||| |||| || || ||||| || Sbjct 82213 ATGAGCTCCCTGTGGAGGTTCCTTGAGTTCTCTAATGAGAACTATATTAATTCTGTCCCT 82154 Query 112140 CAGAGGTCTATTCTTTTCGGGGATG----GAGAACCAAGTCTTTCTACCCATTATCACCA 112195 | ||||| |||||| | || ||| |||||||| || || |||||||| ||||||| Sbjct 82153 TAAAGGTCGATTCTTCTGTGGAATGAATGGAGAACCAGGTTTTCCTACCCATAATCACCA 82094 Query 112196 CGTTCTGCTTGCC-TCTGACTGAAGACGTAGCGGTCA 112231 ||||| || || |||| ||||| | || | ||||| Sbjct 82093 AATTCTGTTTACCTTCTG-CTGAAAAGGTTGTGGTCA 82058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408332727515519